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Os01g0882800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Amino acid carrier (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.11 (0.0976) R2 : 0.695
β1 : 9.83 (0.489) R2dD : 1.07 R2D : -0.447
β2 : 2.93 (0.166) R2dC : 0.219 R2C : -0.118
β3 : -11.5 (0.712) R2dE : 1.15 R2E : -2.33
β4 : 3 (0.623) R2dD*C : 0.016 R2D*C : -0.306
β5 : -37.9 (1.72) R2dD*E : 1.28 R2D*E : 0.055
γ1 : 0.972 (0.185) R2dN8 : 0.0398 R2N8 : -0.4
σ : 1.29
deviance : 753.09
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C
peak time of C : 23.6
E
wheather : radiation
threshold : 20
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
753.09 1.29 9.11 9.83 2.93 -11.5 3 -37.9 0.972 23.6 20 4320 18.1 11
1009.98 1.48 7.49 7.84 2.22 -7.2 1.45 -- 1.23 0.171 95.99 47520 18.2 9.5
792.31 1.31 9.11 9.83 2.93 -11.5 -- -37.5 0.972 23.6 20 4320 18.1 11
818.21 1.33 7.75 7.44 3.85 -6.66 -- -- 0.991 23.3 164.9 47520 18.4 9.4
1283.03 1.67 9.11 9.83 -- -11 -- -37.5 0.972 -- 20 4320 18.1 11.2
1554.09 1.85 7.69 4.49 2.38 -- 1.28 -- 0.952 24 -- -- -- --
1561.23 1.85 7.69 4.44 2.38 -- -- -- 0.946 24 -- -- -- --
1146.96 1.58 7.9 5.31 -- -4.87 -- -- 0.193 -- 5.132 47520 18.4 8.31
1300.11 1.68 8.12 -- 5.15 -6.71 -- -- -0.259 23.3 79.09 47520 18.7 9.1
1916.5 2.05 7.64 4.51 -- -- -- -- 0.979 -- -- -- -- --
2079.87 2.13 7.8 -- 2.43 -- -- -- 0.452 0.0826 -- -- -- --
1386.21 1.73 7.94 -- -- -5.52 -- -- -0.263 -- 0.06177 47520 18.6 9.38
2452.88 2.31 7.75 -- -- -- -- -- 0.478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 685.48 radiation 1 14400 < th dose dependent rect. 2 3
2 686.20 radiation 1 14400 < th dose dependent rect. 4 1
5 726.32 radiation 1 14400 > th dose independent rect. 18 1
17 756.14 radiation 1 14400 < th dose independent rect. 18 9
19 756.64 radiation 1 14400 < th dose independent rect. 18 7
23 758.28 radiation 1 14400 < th dose independent rect. 18 2
28 758.99 wind 3 43200 > th dose dependent rect. 9 7
30 765.01 radiation 1 14400 < th dose dependent rect. 18 1
32 765.47 radiation 1 14400 < th dose dependent rect. 18 5
37 767.46 wind 5 43200 < th dose independent rect. 9 8
50 769.33 radiation 1 14400 < th dose dependent rect. 18 9
53 769.87 wind 9 43200 < th dose dependent rect. 9 6
56 771.06 wind 5 43200 < th dose independent rect. 10 6
59 771.71 wind 5 43200 > th dose independent rect. 9 8
62 773.86 wind 5 43200 > th dose independent rect. 10 6
73 776.38 wind 3 43200 > th dose dependent rect. 6 11
74 776.67 wind 9 43200 < th dose dependent rect. 11 3
84 778.65 wind 5 43200 < th dose dependent rect. 11 1
90 779.55 radiation 1 14400 < th dose dependent rect. 22 7
104 780.59 radiation 20 43200 < th dose independent rect. 8 1
111 784.73 wind 3 43200 < th dose independent rect. 9 1
115 785.71 wind 3 43200 < th dose dependent rect. 8 4
121 786.69 wind 3 43200 > th dose independent rect. 9 1
147 792.07 wind 3 43200 > th dose dependent sin 0 NA
177 797.33 wind 5 43200 < th dose independent sin 23 NA
191 798.34 radiation 20 4320 < th dose dependent rect. 18 11
209 799.75 humidity 80 43200 < th dose dependent rect. 22 1
211 799.89 humidity 80 43200 > th dose independent rect. 3 1
231 801.45 radiation 40 43200 > th dose independent rect. 10 1
241 802.59 wind 3 43200 < th dose independent rect. 9 3
246 803.09 wind 5 43200 > th dose independent sin 22 NA
291 806.68 wind 1 43200 < th dose dependent rect. 24 2
296 806.99 radiation 20 43200 < th dose independent rect. 3 7
297 807.00 radiation 20 43200 < th dose independent rect. 1 9
305 807.10 radiation 20 43200 < th dose independent rect. 18 16
309 807.15 radiation 20 43200 < th dose independent rect. 21 13
332 808.35 wind 3 43200 < th dose independent rect. 11 1
347 809.89 radiation 40 43200 < th dose independent rect. 10 1
350 810.07 radiation 30 4320 < th dose dependent rect. 18 9
392 813.14 humidity 80 43200 < th dose independent rect. 3 1
409 814.92 wind 5 43200 > th dose dependent rect. 15 1
410 814.98 humidity 90 43200 > th dose independent rect. 22 1
418 815.75 humidity 80 43200 < th dose independent rect. 23 1
447 817.35 temperature 25 4320 > th dose dependent rect. 16 1
454 817.80 wind 3 43200 > th dose independent rect. 11 1
485 819.77 humidity 80 43200 < th dose independent rect. 23 5
514 821.10 radiation 40 43200 > th dose dependent rect. 10 2
549 822.17 temperature 20 4320 > th dose dependent rect. 16 3
566 823.28 temperature 25 4320 < th dose independent rect. 17 1
583 824.08 wind 9 43200 < th dose dependent sin 1 NA
601 824.93 temperature 25 4320 > th dose independent rect. 17 1
633 826.39 radiation 20 43200 < th dose independent sin 9 NA
638 826.46 humidity 90 14400 > th dose dependent rect. 21 5
651 827.25 atmosphere 1005 43200 > th dose independent rect. 16 1
705 829.48 atmosphere 1005 43200 > th dose independent rect. 18 1
713 829.77 atmosphere 1005 43200 < th dose independent rect. 18 1
726 830.11 atmosphere 1005 43200 < th dose independent rect. 16 1
734 830.28 humidity 80 43200 < th dose independent rect. 21 8
767 831.13 humidity 80 43200 < th dose independent rect. 21 1
784 831.82 atmosphere 1005 43200 > th dose independent rect. 16 4
797 832.15 wind 5 43200 > th dose independent rect. 15 1
816 832.32 radiation 20 43200 > th dose independent rect. 8 1
856 833.92 humidity 90 43200 < th dose independent rect. 18 2
889 834.90 humidity 90 14400 > th dose dependent rect. 19 9
891 835.00 atmosphere 1005 43200 < th dose independent rect. 16 3
927 836.00 humidity 90 43200 < th dose independent rect. 17 6
947 836.60 atmosphere 1005 43200 < th dose independent rect. 16 5
954 836.81 radiation 1 4320 > th dose dependent rect. 18 1
968 837.02 humidity 80 43200 < th dose dependent rect. 21 12