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Os06g0556000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Amino acid carrier (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0184) R2 : 0.739
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.64 (0.0458) R2dC : 0.732 R2C : 0.724
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.173 (0.0388) R2dN8 : 0.0146 R2N8 : 0.00684
σ : 0.348
deviance : 55.36
__
_____
C
peak time of C : 2.82
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.15 0.316 11.9 0.264 1.42 -0.412 -0.481 0.0584 -0.0768 2.26 86 365 -- --
45.14 0.313 11.9 0.258 1.41 -0.41 -0.501 -- -0.078 2.27 85.75 357 -- --
45.87 0.315 11.9 0.288 1.42 -0.405 -- 0.221 -0.0749 2.25 85.47 357 -- --
46.07 0.316 11.9 0.275 1.42 -0.398 -- -- -0.0765 2.27 85.71 357 -- --
95.63 0.455 11.9 0.418 -- -1.05 -- 0.0372 -0.12 -- 79 115 -- --
51.69 0.337 11.9 0.332 1.63 -- -0.417 -- -0.137 2.83 -- -- -- --
52.29 0.339 11.9 0.342 1.63 -- -- -- -0.135 2.81 -- -- -- --
95.31 0.455 11.9 0.426 -- -1.06 -- -- -0.124 -- 78.29 137 -- --
48.04 0.323 11.9 -- 1.41 -0.432 -- -- -0.0921 2.21 85 357 -- --
205.85 0.67 11.9 0.411 -- -- -- -- -0.0929 -- -- -- -- --
55.36 0.348 11.9 -- 1.64 -- -- -- -0.173 2.82 -- -- -- --
100.09 0.466 11.9 -- -- -1.06 -- -- -0.171 -- 79 137 -- --
210.31 0.677 11.9 -- -- -- -- -- -0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.77 radiation 1.0 270 < th dose independent rect. 4 14
2 36.82 temperature 10.0 90 > th dose dependent rect. 21 7
3 36.95 radiation 1.0 270 < th dose independent rect. 3 16
5 37.01 radiation 1.0 270 < th dose dependent rect. 4 15
12 37.88 radiation 1.0 270 > th dose independent sin 1 NA
16 38.14 temperature 10.0 10 > th dose dependent rect. 22 6
17 38.17 radiation 1.0 270 < th dose independent sin 1 NA
28 38.65 humidity 50.0 270 > th dose dependent rect. 2 8
29 38.66 radiation 20.0 270 < th dose independent rect. 2 7
36 38.91 radiation 1.0 270 < th dose dependent sin 1 NA
41 39.08 humidity 70.0 270 > th dose dependent rect. 2 18
42 39.11 humidity 50.0 90 > th dose dependent rect. 4 17
43 39.16 radiation 40.0 270 < th dose dependent rect. 2 7
49 39.25 radiation 30.0 270 < th dose dependent rect. 15 17
60 39.41 humidity 80.0 270 > th dose independent rect. 2 18
83 39.73 humidity 70.0 270 > th dose independent rect. 2 7
94 39.89 wind 9.0 90 < th dose independent rect. 21 7
95 39.89 precipitation 0.1 90 < th dose independent rect. 21 7
97 39.89 precipitation 0.1 90 < th dose dependent rect. 21 7
102 39.92 temperature 10.0 90 > th dose independent rect. 21 7
103 39.92 temperature 30.0 90 < th dose independent rect. 21 7
104 39.92 humidity 50.0 90 > th dose independent rect. 21 7
107 39.92 atmosphere 995.0 90 > th dose independent rect. 21 7
108 39.92 radiation 1.0 90 < th dose independent rect. 21 7
113 39.92 temperature 10.0 90 > th dose independent rect. 4 17
114 39.92 atmosphere 1015.0 90 < th dose independent rect. 4 17
115 39.92 radiation 1.0 90 < th dose dependent rect. 21 7
120 39.95 humidity 70.0 270 > th dose independent rect. 1 9
121 39.95 precipitation 0.1 270 < th dose independent rect. 9 17
123 39.95 precipitation 0.1 270 < th dose dependent rect. 9 17
162 40.20 radiation 1.0 270 > th dose independent rect. 6 10
164 40.21 radiation 20.0 270 < th dose independent rect. 15 17
170 40.27 radiation 1.0 270 < th dose dependent rect. 17 1
178 40.30 radiation 1.0 270 > th dose independent rect. 17 22
194 40.36 temperature 20.0 10 > th dose independent rect. 22 6
201 40.40 wind 9.0 90 < th dose independent rect. 4 17
204 40.41 radiation 40.0 90 < th dose dependent rect. 4 17
207 40.42 humidity 50.0 90 > th dose dependent rect. 4 7
233 40.56 radiation 1.0 270 < th dose independent rect. 17 1
236 40.58 temperature 10.0 1440 > th dose independent rect. 23 6
239 40.58 temperature 30.0 1440 < th dose independent rect. 23 6
243 40.58 humidity 50.0 1440 > th dose independent rect. 23 6
252 40.58 atmosphere 995.0 1440 > th dose independent rect. 23 6
253 40.58 radiation 20.0 1440 < th dose independent rect. 23 6
265 40.58 temperature 10.0 1440 > th dose independent rect. 5 18
271 40.60 atmosphere 1015.0 90 < th dose independent rect. 21 7
309 40.71 radiation 40.0 90 < th dose independent rect. 4 17
351 40.79 atmosphere 995.0 90 > th dose independent rect. 4 17
360 40.84 precipitation 0.1 90 < th dose independent rect. 4 17
363 40.84 precipitation 0.1 90 < th dose dependent rect. 4 17
371 40.90 wind 7.0 270 < th dose independent rect. 1 8
375 40.91 wind 9.0 270 < th dose independent rect. 9 17
380 40.93 temperature 30.0 270 < th dose independent rect. 2 7
413 40.96 temperature 30.0 90 < th dose dependent rect. 15 6
430 41.01 temperature 10.0 270 > th dose independent rect. 2 7
433 41.01 atmosphere 995.0 270 > th dose independent rect. 2 7
434 41.01 atmosphere 1015.0 270 < th dose independent rect. 2 7
436 41.01 temperature 10.0 270 > th dose independent rect. 9 17
438 41.02 wind 1.0 90 > th dose independent rect. 4 17
447 41.06 atmosphere 995.0 270 > th dose independent rect. 2 18
466 41.10 temperature 30.0 270 < th dose dependent rect. 17 1
468 41.10 humidity 50.0 90 > th dose dependent rect. 21 7
518 41.14 precipitation 0.1 270 < th dose independent rect. 2 7
519 41.14 precipitation 0.1 270 < th dose independent rect. 5 23
520 41.14 precipitation 0.1 270 < th dose dependent rect. 2 7
521 41.14 precipitation 0.1 270 < th dose dependent rect. 5 23
538 41.23 precipitation 0.1 10 < th dose independent rect. 22 6
541 41.23 precipitation 0.1 10 < th dose dependent rect. 22 6
544 41.24 humidity 50.0 90 > th dose independent rect. 4 17
555 41.28 wind 9.0 10 < th dose independent rect. 22 6
556 41.28 temperature 10.0 10 > th dose independent rect. 22 6
557 41.28 temperature 30.0 10 < th dose independent rect. 22 6
558 41.28 humidity 50.0 10 > th dose independent rect. 22 6
561 41.28 atmosphere 995.0 10 > th dose independent rect. 22 6
562 41.28 radiation 1.0 10 < th dose independent rect. 22 6
568 41.28 temperature 10.0 10 > th dose independent rect. 4 18
570 41.28 atmosphere 1015.0 10 < th dose independent rect. 4 18
571 41.28 radiation 20.0 270 < th dose independent rect. 2 18
572 41.28 radiation 1.0 10 < th dose dependent rect. 22 6
577 41.28 temperature 10.0 90 > th dose dependent rect. 11 16
592 41.29 wind 1.0 10 > th dose independent rect. 4 18
605 41.30 wind 9.0 90 < th dose dependent rect. 21 7
611 41.34 temperature 10.0 270 > th dose dependent rect. 9 16
622 41.37 precipitation 0.1 270 < th dose independent rect. 21 16
624 41.37 precipitation 0.1 270 < th dose dependent rect. 21 16
629 41.38 temperature 30.0 10 < th dose dependent rect. 16 6
631 41.39 temperature 25.0 270 < th dose independent rect. 17 1
641 41.41 temperature 25.0 90 < th dose independent rect. 16 5
646 41.42 humidity 70.0 10 > th dose independent rect. 4 18
652 41.45 atmosphere 1015.0 90 < th dose dependent rect. 21 7
659 41.47 humidity 50.0 270 > th dose independent rect. 2 18
662 41.48 radiation 20.0 90 < th dose independent rect. 4 17
670 41.50 precipitation 0.1 10 < th dose independent rect. 4 18
674 41.50 precipitation 0.1 10 < th dose dependent rect. 4 18
691 41.55 atmosphere 995.0 270 > th dose independent rect. 7 8
699 41.56 precipitation 0.1 270 < th dose independent rect. 7 8
703 41.56 precipitation 0.1 270 < th dose dependent rect. 7 8
705 41.57 temperature 10.0 270 > th dose independent rect. 13 8
707 41.57 temperature 10.0 270 > th dose independent rect. 21 16
708 41.57 atmosphere 995.0 270 > th dose independent rect. 21 16
712 41.57 precipitation 0.1 270 < th dose independent rect. 2 18
714 41.57 radiation 10.0 43200 < th dose dependent rect. 23 5
719 41.57 precipitation 0.1 270 < th dose dependent rect. 2 18
739 41.61 wind 9.0 270 < th dose independent rect. 21 16
747 41.64 temperature 10.0 270 > th dose independent rect. 7 8
748 41.64 atmosphere 1015.0 270 < th dose independent rect. 7 8
750 41.64 temperature 10.0 270 > th dose independent rect. 15 16
755 41.65 atmosphere 995.0 270 > th dose independent rect. 16 15
771 41.67 precipitation 0.1 270 < th dose independent rect. 6 21
773 41.67 precipitation 0.1 270 < th dose dependent rect. 6 21
777 41.69 radiation 1.0 270 < th dose dependent rect. 14 5
795 41.71 humidity 50.0 10 > th dose independent rect. 4 18
806 41.72 wind 9.0 270 < th dose independent rect. 7 8
845 41.77 atmosphere 1015.0 270 < th dose independent rect. 21 16
848 41.78 wind 1.0 270 > th dose independent rect. 20 7
883 41.81 wind 9.0 10 < th dose dependent rect. 21 7
948 41.85 temperature 10.0 270 > th dose dependent rect. 2 7
964 41.86 radiation 40.0 270 < th dose independent rect. 2 18
981 41.87 wind 9.0 270 < th dose independent rect. 13 8