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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0659800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Amino acid transporter b (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0495) R2 : 0.564
β1 : 0.901 (0.181) R2dD : 0.0247 R2D : 0.0132
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.48 (0.106) R2dE : 0.534 R2E : 0.539
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.107) R2dN8 : 0.00437 R2N8 : 0.0127
σ : 0.924
deviance : 393.61
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C
peak time of C : --
E
wheather : humidity
threshold : 72.4
memory length : 714
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 3.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.55 0.909 4.07 0.917 0.153 2.58 0.327 2.39 0.197 9.96 71.01 728 17.2 3.92
378.09 0.906 4.06 1 0.325 2.84 -2.14 -- 0.239 13.5 72 703 17.5 4
372.52 0.899 4.07 0.906 0.206 2.56 -- 2.2 0.172 8.91 71.07 710 17.5 3.62
393.45 0.924 4.06 0.929 0.222 2.6 -- -- 0.186 8.85 72 698 17.5 3.67
371.52 0.898 4.07 0.876 -- 2.48 -- 2.11 0.205 -- 72.15 716 17.6 3.57
504.69 1.05 4 0.858 2.38 -- 1.76 -- 0.524 1.46 -- -- -- --
517.26 1.07 4.01 0.798 2.38 -- -- -- 0.514 1.48 -- -- -- --
393.61 0.924 4.06 0.901 -- 2.48 -- -- 0.193 -- 72.4 714 17.6 3.58
414.14 0.948 4.08 -- 0.201 2.55 -- -- 0.0998 8.6 72 696 17.6 3.47
864.56 1.37 3.98 0.893 -- -- -- -- 0.565 -- -- -- -- --
534.05 1.08 4.03 -- 2.39 -- -- -- 0.425 1.49 -- -- -- --
415.13 0.949 4.08 -- -- 2.47 -- -- 0.105 -- 72.3 712 17.6 3.63
885.59 1.39 4 -- -- -- -- -- 0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 378.64 humidity 70 720 > th dose independent rect. 17 4
2 380.87 humidity 70 720 > th dose independent rect. 17 14
4 382.70 humidity 70 720 > th dose independent rect. 17 12
7 386.39 humidity 70 720 > th dose independent rect. 17 9
13 390.33 humidity 70 720 < th dose independent rect. 17 14
15 390.61 humidity 70 720 < th dose independent rect. 17 3
31 392.66 humidity 60 720 > th dose dependent rect. 17 4
37 393.73 humidity 50 720 > th dose dependent rect. 15 6
40 393.94 humidity 80 720 < th dose dependent rect. 15 6
55 396.61 humidity 80 720 < th dose dependent rect. 15 17
66 397.31 humidity 70 720 < th dose independent sin 13 NA
67 397.34 humidity 70 720 > th dose independent sin 13 NA
76 398.07 humidity 80 720 < th dose dependent sin 13 NA
224 406.83 humidity 50 720 > th dose dependent sin 16 NA
367 410.70 humidity 50 720 > th dose dependent rect. 15 16
607 414.73 radiation 1 720 < th dose dependent sin 21 NA
631 415.14 humidity 80 720 > th dose independent rect. 11 11
674 415.74 radiation 1 720 < th dose dependent rect. 5 21
712 416.07 humidity 50 720 > th dose dependent rect. 11 15
719 416.19 radiation 1 720 < th dose dependent rect. 8 18
898 418.06 humidity 50 1440 > th dose dependent rect. 15 1
953 418.53 humidity 50 720 > th dose dependent rect. 11 20