BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0659800 Os04g0659800|016-072-G05
(81 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44100.1 | chr1:16764651-16767223 REVERSE LENGTH=481 96 4e-21
AT5G63850.1 | chr5:25551494-25553374 FORWARD LENGTH=467 92 6e-20
AT1G77380.1 | chr1:29075201-29077252 REVERSE LENGTH=477 91 2e-19
AT1G10010.1 | chr1:3265976-3268726 FORWARD LENGTH=476 90 2e-19
AT5G09220.1 | chr5:2866867-2868863 FORWARD LENGTH=494 89 5e-19
AT5G23810.1 | chr5:8028461-8030730 FORWARD LENGTH=468 84 2e-17
AT5G49630.1 | chr5:20142681-20146441 REVERSE LENGTH=482 83 3e-17
AT1G58360.1 | chr1:21676623-21680313 FORWARD LENGTH=486 80 3e-16
>AT1G44100.1 | chr1:16764651-16767223 REVERSE LENGTH=481
Length = 480
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 11 SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTY 70
S+ DDDG P+RTG +WT AHIITAVIG GVL+L+W+VAQ+GW+ GP+AM+ F+FVT+
Sbjct: 16 SSDSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWIGGPVAMLLFSFVTF 75
Query: 71 ISAFLLSHC 79
++ LL C
Sbjct: 76 YTSTLLCSC 84
>AT5G63850.1 | chr5:25551494-25553374 FORWARD LENGTH=467
Length = 466
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%)
Query: 15 LDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAF 74
DDDG +R+G +WT AHIITAVIG GVL+L+W++ QLGW+AGP M+ F+FVTY S+
Sbjct: 11 FDDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSST 70
Query: 75 LLSHC 79
LLS C
Sbjct: 71 LLSDC 75
>AT1G77380.1 | chr1:29075201-29077252 REVERSE LENGTH=477
Length = 476
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 1 MAPQLPLEVASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPI 60
+A +P + + LDDDG +RTG++WT AHIITAVIG GVL+L+W+ AQLGW+AGP+
Sbjct: 9 LAVDMP-QTGGSKYLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPV 67
Query: 61 AMVCFAFVTYISAFLLSHC 79
M+ F+ VTY ++ LL+ C
Sbjct: 68 VMLLFSAVTYFTSSLLAAC 86
>AT1G10010.1 | chr1:3265976-3268726 FORWARD LENGTH=476
Length = 475
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
A+ +DDDG +RTG WT AHIITAVIG GVL+L+W++AQLGWVAG +V FA +T
Sbjct: 15 AAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIIT 74
Query: 70 YISAFLLSHC 79
Y ++ LL+ C
Sbjct: 75 YYTSTLLADC 84
>AT5G09220.1 | chr5:2866867-2868863 FORWARD LENGTH=494
Length = 493
Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 15 LDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAF 74
DDDG +RTG +WT AHIITAVIG GVL+L+W++AQLGW+AGP M+ F+ VT S+
Sbjct: 38 FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSST 97
Query: 75 LLSHC 79
LLS C
Sbjct: 98 LLSDC 102
>AT5G23810.1 | chr5:8028461-8030730 FORWARD LENGTH=468
Length = 467
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%)
Query: 18 DGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLS 77
D RTG LWT VAHIIT VIG GVL+L+W+ A+LGW+AGP A++ FA VT +SAFLLS
Sbjct: 21 DSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLS 80
Query: 78 HC 79
C
Sbjct: 81 DC 82
>AT5G49630.1 | chr5:20142681-20146441 REVERSE LENGTH=482
Length = 481
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 8 EVASAPK-LDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFA 66
E+ K D+DG +RTG T AHIITAVIG GVL+L+W++AQLGWVAGP ++ F+
Sbjct: 17 EIGDTNKNFDEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFS 76
Query: 67 FVTYISAFLLSHC 79
F+TY ++ +L+ C
Sbjct: 77 FITYFTSTMLADC 89
>AT1G58360.1 | chr1:21676623-21680313 FORWARD LENGTH=486
Length = 485
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 13 PKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYIS 72
+D+DG +RTG T AHIITAVIG GVL+L+W++AQLGW+AG ++ F+F+TY +
Sbjct: 27 KNVDEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFT 86
Query: 73 AFLLSHC 79
+ +L+ C
Sbjct: 87 STMLADC 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.136 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,933,701
Number of extensions: 64173
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 8
Length of query: 81
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 29
Effective length of database: 9,680,937
Effective search space: 280747173
Effective search space used: 280747173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)