BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0524300 Os04g0524300|AK106426
(134 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0524300 Similar to ZmRR2 protein (Response regulator 2) 270 2e-73
Os02g0631700 Similar to ZmRR2 protein (Response regulator 2) 222 5e-59
Os07g0449700 210 2e-55
Os04g0673300 Similar to ZmRR2 protein (Response regulator 2) 195 8e-51
Os02g0830200 Similar to ZmRR2 protein (Response regulator 2) 188 9e-49
Os12g0139400 Similar to Type-A response regulator 149 4e-37
Os11g0143300 Similar to Type-A response regulator 149 5e-37
Os01g0952500 Similar to Two-component response regulator AR... 148 8e-37
Os04g0442300 Similar to ZmRR2 protein (Response regulator 2) 129 7e-31
Os02g0557800 CheY-like domain containing protein 116 6e-27
Os08g0358800 Response regulator receiver domain containing ... 105 1e-23
Os08g0377200 103 4e-23
Os09g0532400 CheY-like domain containing protein 76 9e-15
Os07g0695100 CheY-like domain containing protein 74 2e-14
Os03g0284100 Two-component response regulator-like PRR73 (P... 71 2e-13
Os06g0183100 Similar to Two-component response regulator ARR14 65 1e-11
Os11g0157600 Similar to Timing of CAB expression 1 62 1e-10
>Os04g0524300 Similar to ZmRR2 protein (Response regulator 2)
Length = 134
Score = 270 bits (690), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV 60
MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV
Sbjct: 1 MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV 60
Query: 61 SMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPV 120
SMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPV
Sbjct: 61 SMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPV 120
Query: 121 QPSDVSRLCSRVLR 134
QPSDVSRLCSRVLR
Sbjct: 121 QPSDVSRLCSRVLR 134
>Os02g0631700 Similar to ZmRR2 protein (Response regulator 2)
Length = 147
Score = 222 bits (566), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/119 (92%), Positives = 117/119 (98%)
Query: 15 PHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 74
PHVLAVDDSSVDRAVI+GILRSS+FRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG
Sbjct: 28 PHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 87
Query: 75 YELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVL 133
YELLKKVKESS+LK+IPVVIMSSENV TRI+RCLEEGAEDFL+KPV+PSDVSRL SRVL
Sbjct: 88 YELLKKVKESSKLKKIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
>Os07g0449700
Length = 212
Score = 210 bits (534), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 115/123 (93%)
Query: 12 GGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNVSMIITDYWMPE 71
P+V+AVDDSSVDRAVI+ +LR S++RVTAVDSGKRALE+LGSEPNVSMIITDYWMPE
Sbjct: 90 AAPPYVMAVDDSSVDRAVITALLRRSKYRVTAVDSGKRALEILGSEPNVSMIITDYWMPE 149
Query: 72 MTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSR 131
MTGY+LLKK+KESS LK+IPVVIMSSENV TRI+RCLEEGAEDFLLKPV+P+D+SR+ SR
Sbjct: 150 MTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRITSR 209
Query: 132 VLR 134
+L+
Sbjct: 210 MLQ 212
>Os04g0673300 Similar to ZmRR2 protein (Response regulator 2)
Length = 170
Score = 195 bits (495), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 110/127 (86%), Gaps = 2/127 (1%)
Query: 8 GVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELL--GSEPNVSMIIT 65
G E HVLAVDDSSVDRAVI+ ILRSS++RVT V+S RALELL G PNV+MIIT
Sbjct: 43 GDEAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIIT 102
Query: 66 DYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDV 125
DYWMP MTGYELLK+VKESS+LKEIPVVIMSSENV RI+RCLEEGAEDFLLKPV+PSDV
Sbjct: 103 DYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDV 162
Query: 126 SRLCSRV 132
SRLCSR+
Sbjct: 163 SRLCSRI 169
>Os02g0830200 Similar to ZmRR2 protein (Response regulator 2)
Length = 131
Score = 188 bits (478), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 106/119 (89%)
Query: 15 PHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 74
PHVLAVDDS VDR VIS +LRSS++RVT VDSGKRALE+L + NV MIITDY MPEMTG
Sbjct: 11 PHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVHMIITDYCMPEMTG 70
Query: 75 YELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVL 133
++LLK+VKES+ LKEIPVV+MSSEN TRI RCLEEGAEDFL+KPV+PSDVSRLC+RV+
Sbjct: 71 FDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVI 129
>Os12g0139400 Similar to Type-A response regulator
Length = 201
Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 100/137 (72%), Gaps = 16/137 (11%)
Query: 14 AP-HVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLG---------------SE 57
AP HVLAVDDS DR +I +L++S F+VT VDSG +ALE LG E
Sbjct: 7 APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQE 66
Query: 58 PNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLL 117
V++IITDY MP MTGY+LLKK+KESS L++IPVVIMSS+N+ +RINRCLEEGA++F L
Sbjct: 67 VGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 126
Query: 118 KPVQPSDVSRLCSRVLR 134
KPV+ SD+S+L +L+
Sbjct: 127 KPVRLSDMSKLKPHILK 143
>Os11g0143300 Similar to Type-A response regulator
Length = 201
Score = 149 bits (376), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 100/137 (72%), Gaps = 16/137 (11%)
Query: 14 AP-HVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLG---------------SE 57
AP HVLAVDDS DR +I +L++S F+VT VDSG +ALE LG E
Sbjct: 7 APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQE 66
Query: 58 PNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLL 117
V++IITDY MP MTGY+LLKK+KESS L++IPVVIMSS+N+ +RINRCLEEGA++F L
Sbjct: 67 VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 126
Query: 118 KPVQPSDVSRLCSRVLR 134
KPV+ SD+S+L +L+
Sbjct: 127 KPVRLSDMSKLKPHILK 143
>Os01g0952500 Similar to Two-component response regulator ARR9 (Response reactor
4)
Length = 232
Score = 148 bits (374), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/138 (55%), Positives = 99/138 (71%), Gaps = 19/138 (13%)
Query: 16 HVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLG-------------------S 56
HVLAVDDS +DR +I +L++S ++VT VDSG +ALELLG
Sbjct: 11 HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSSPDHQ 70
Query: 57 EPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFL 116
E +V++IITDY MP MTGY+LLK+VK SS LK+IPVVIMSSENV RINRCLE+GAE+F
Sbjct: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
Query: 117 LKPVQPSDVSRLCSRVLR 134
LKPV+ +D+ +L S +L+
Sbjct: 131 LKPVKLADMKKLKSHLLK 148
>Os04g0442300 Similar to ZmRR2 protein (Response regulator 2)
Length = 262
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 17 VLAVDDSSVDRAVISGILRSS----QFRVTAVDSGKRALELLG-----SEPNVSMIITDY 67
VL VDDS VDR V+ +L SS F V AVDS K+A+E LG E + M++TDY
Sbjct: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
Query: 68 WMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSR 127
MPEMTGYELLK +K S LK IPV++MSSEN RI+RC+ GAEDF++KP+Q DV R
Sbjct: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
Query: 128 L 128
L
Sbjct: 161 L 161
>Os02g0557800 CheY-like domain containing protein
Length = 306
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 92/162 (56%), Gaps = 37/162 (22%)
Query: 10 ERGGAP--HVLAVDDSSVDRAVISGILRSS-------------QFRVTAVDSGKRALELL 54
ER GA VL VDDS VDR V+ +LR+ F VTAVDSGK+A+ELL
Sbjct: 53 ERMGAEAVRVLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELL 112
Query: 55 G--------------------SEPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVI 94
G ++ + +++TDY MPEMTGY+LLK +K IPVV+
Sbjct: 113 GRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVV 172
Query: 95 MSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRL--CSRVLR 134
MSSEN RI+RCL GAEDF+LKP++ +DV RL CS R
Sbjct: 173 MSSENEPQRISRCLTAGAEDFILKPLKMNDVQRLRKCSGATR 214
>Os08g0358800 Response regulator receiver domain containing protein
Length = 135
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 72/93 (77%)
Query: 40 RVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSEN 99
RVTAV+S +AL L SE +V+MI++DY MPEMTGY+LL +VK+S RL +PV+I SS+N
Sbjct: 43 RVTAVESVMQALVFLDSEHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVIIASSDN 102
Query: 100 VSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRV 132
+ RI +C + GA+D++LKPV+ +DV R+ + +
Sbjct: 103 IPERIRKCFDGGAKDYILKPVKIADVPRILNYI 135
>Os08g0377200
Length = 167
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 72/93 (77%)
Query: 40 RVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSEN 99
RVTAV+S +AL L SE +V+MI++DY MP+MTGY+LL +VK+S +L +PVVI SS+N
Sbjct: 75 RVTAVESVMQALMFLDSEHDVNMIVSDYCMPDMTGYDLLMEVKKSPKLAHLPVVIASSDN 134
Query: 100 VSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRV 132
+ RI +CL+ GA+D++LKPV+ D+ R+ + +
Sbjct: 135 IPERIRKCLDGGAKDYILKPVKIVDLPRILNYI 167
>Os09g0532400 CheY-like domain containing protein
Length = 623
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 21 DDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEP-NVSMIITDYWMPEMTGYELLK 79
DDS+ R +I +LR +RV A G +A ++L + N+ +++T+ +P M+G+ LL
Sbjct: 51 DDST--RHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLS 108
Query: 80 KVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVLR 134
+ E K IPV++MSS + + + +C+ +GA DFL+KP++ +++ L V R
Sbjct: 109 TIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWR 163
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 17 VLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPN-VSMIITDYWMPEMTGY 75
VL VD R V+S +LR + V ++G++A L N + +++T+ MP ++G
Sbjct: 64 VLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGI 123
Query: 76 ELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVLR 134
LL ++ + K IPV++MSS + + +CL +GA DFL+KP++ +++ L V R
Sbjct: 124 SLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 182
>Os03g0284100 Two-component response regulator-like PRR73 (Pseudo-response
regulator 73) (OsPRR73)
Length = 767
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 17 VLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGS-EPNVSMIITDYWMPEMTGY 75
VL V++ R V+S +LR + V ++G A + L + ++ +++T+ MP ++G
Sbjct: 83 VLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGI 142
Query: 76 ELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVLR 134
LL K+ K+IPV++MSS + + +CL +GA DFL+KP++ +++ L V R
Sbjct: 143 GLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 201
>Os06g0183100 Similar to Two-component response regulator ARR14
Length = 696
Score = 65.5 bits (158), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 8 GVERGGAP---HVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV-SMI 63
G ER P VLAVDD V V+ +LR Q+ VT+ + AL+LL ++ ++
Sbjct: 16 GRERDQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTSTNQAITALKLLRENRDMFDLV 75
Query: 64 ITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPS 123
I+D MP+M G++LL+ V ++PV+++S + + + + GA D+LLKPV+
Sbjct: 76 ISDVHMPDMDGFKLLELVGLE---MDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIE 132
Query: 124 DVSRLCSRVLR 134
++ + V+R
Sbjct: 133 ELRNIWQHVVR 143
>Os11g0157600 Similar to Timing of CAB expression 1
Length = 623
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 62 MIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQ 121
+++T+ MP ++G ELL ++ S K IPV++MSS++ + RC+++GA DFL+KPV+
Sbjct: 16 LVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGAVDFLVKPVR 75
Query: 122 PSDVSRLCSRVLR 134
+++ L V R
Sbjct: 76 KNELRNLWQHVWR 88
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,179,069
Number of extensions: 138555
Number of successful extensions: 405
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 17
Length of query: 134
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 44
Effective length of database: 12,336,541
Effective search space: 542807804
Effective search space used: 542807804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)