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Os09g0532400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CheY-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0428) R2 : 0.952
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.97 (0.166) R2dC : 0.084 R2C : 0.416
β3 : -7.37 (0.163) R2dE : 0.537 R2E : 0.868
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.174 (0.0902) R2dN8 : 0.000508 R2N8 : -0.000969
σ : 0.804
deviance : 298.19
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_____
C
peak time of C : 14.1
E
wheather : temperature
threshold : 0.02936
memory length : 132
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 8.88

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.28 0.809 11.3 0.635 3.35 -7.13 0.63 1.1 0.243 13.8 4.424 112 18.8 8.87
291.46 0.795 11.3 0.638 3.23 -7.18 -0.181 -- 0.244 13.8 2.983 127 18.7 8.87
290.6 0.794 11.3 0.647 2.98 -7.47 -- 0.633 0.339 14.1 2.648 128 18.6 8.88
289.92 0.793 11.3 0.588 3 -7.34 -- -- 0.283 13.9 1.265 131 18.6 8.87
403.1 0.935 11.4 1.23 -- -8.96 -- 2.63 0.261 -- -13.29 183 18.2 9.33
994.47 1.48 11.2 0.449 9.16 -- 0.26 -- 0.0491 12.6 -- -- -- --
994.76 1.48 11.2 0.459 9.16 -- -- -- 0.0504 12.6 -- -- -- --
349.83 0.871 11.4 0.582 -- -9.51 -- -- 0.0283 -- -10.72 192 18.2 9.23
298.19 0.804 11.3 -- 2.97 -7.37 -- -- 0.174 14.1 0.02936 132 18.6 8.88
6253.08 3.69 11.4 0.134 -- -- -- -- -0.11 -- -- -- -- --
1000.32 1.48 11.2 -- 9.15 -- -- -- -0.000705 12.6 -- -- -- --
358.25 0.882 11.4 -- -- -9.48 -- -- -0.0455 -- -12.06 192 18.2 9.22
6253.56 3.69 11.4 -- -- -- -- -- -0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.75 temperature 10.0 90 > th dose dependent rect. 19 9
2 367.00 temperature 15.0 90 > th dose independent rect. 19 9
3 368.16 temperature 15.0 270 > th dose independent rect. 17 9
6 397.53 radiation 1.0 90 < th dose dependent sin 13 NA
7 407.81 humidity 50.0 270 > th dose independent rect. 17 10
8 407.93 precipitation 0.1 270 < th dose independent rect. 2 15
9 407.93 precipitation 0.1 270 < th dose dependent rect. 2 15
13 411.28 radiation 20.0 270 < th dose dependent rect. 17 10
16 413.72 radiation 10.0 270 < th dose independent rect. 17 10
25 419.80 temperature 10.0 270 > th dose independent rect. 2 15
26 419.80 atmosphere 1015.0 270 < th dose independent rect. 2 15
37 423.20 temperature 30.0 90 < th dose independent rect. 19 9
38 423.20 humidity 50.0 90 > th dose independent rect. 19 9
40 423.20 atmosphere 995.0 90 > th dose independent rect. 19 9
41 423.20 radiation 1.0 90 < th dose independent rect. 19 9
48 423.20 radiation 1.0 90 < th dose dependent rect. 19 9
57 424.47 wind 9.0 90 < th dose independent rect. 19 9
59 425.21 wind 9.0 270 < th dose independent rect. 2 15
61 426.15 wind 9.0 270 < th dose independent rect. 17 9
64 431.80 wind 9.0 90 < th dose independent rect. 4 15
68 436.08 radiation 1.0 90 < th dose independent sin 13 NA
70 436.57 radiation 1.0 90 > th dose independent sin 13 NA
71 437.08 atmosphere 1010.0 90 < th dose independent rect. 19 9
75 442.52 precipitation 0.1 270 < th dose independent rect. 17 9
76 442.52 precipitation 0.1 270 < th dose dependent rect. 17 9
77 442.81 precipitation 0.1 90 < th dose independent rect. 19 9
78 442.81 precipitation 0.1 90 < th dose dependent rect. 19 9
81 445.61 atmosphere 995.0 270 > th dose independent rect. 17 9
83 447.04 temperature 15.0 270 > th dose independent rect. 17 20
85 447.32 temperature 15.0 270 > th dose independent rect. 18 18
87 447.79 temperature 10.0 270 > th dose dependent rect. 18 18
88 449.13 precipitation 0.1 270 < th dose independent rect. 13 17
89 449.13 precipitation 0.1 270 < th dose dependent rect. 13 17
92 452.84 wind 9.0 270 < th dose independent rect. 13 17
93 456.61 wind 9.0 270 < th dose independent rect. 6 7
94 456.88 precipitation 0.1 270 < th dose independent rect. 6 7
95 456.88 precipitation 0.1 270 < th dose dependent rect. 6 7
97 457.34 temperature 10.0 270 > th dose independent rect. 6 7
98 457.34 atmosphere 995.0 270 > th dose independent rect. 6 7
99 457.34 atmosphere 1015.0 270 < th dose independent rect. 6 7
100 457.34 temperature 10.0 270 > th dose independent rect. 13 17
113 461.50 atmosphere 995.0 270 > th dose independent rect. 2 15
121 466.75 radiation 1.0 270 > th dose independent rect. 6 7
125 468.24 radiation 1.0 270 > th dose independent rect. 13 17
151 476.69 humidity 50.0 270 > th dose independent rect. 6 7
175 486.88 atmosphere 995.0 90 > th dose independent rect. 4 15
182 490.67 wind 1.0 270 > th dose independent rect. 6 7
206 494.96 atmosphere 1015.0 270 < th dose independent rect. 17 9
207 495.05 temperature 15.0 270 > th dose independent rect. 7 18
211 495.67 atmosphere 995.0 270 > th dose independent rect. 13 17
253 501.55 radiation 1.0 90 > th dose independent rect. 15 15
262 502.73 precipitation 0.1 270 < th dose independent rect. 13 4
263 502.73 precipitation 0.1 270 < th dose dependent rect. 13 4
269 504.31 wind 9.0 270 < th dose independent rect. 13 4
272 504.63 radiation 1.0 270 > th dose independent rect. 13 4
280 505.62 temperature 10.0 270 > th dose independent rect. 13 4
282 505.62 atmosphere 1010.0 270 < th dose independent rect. 13 4
297 507.77 wind 9.0 270 < th dose independent rect. 17 20
309 509.84 wind 9.0 270 < th dose independent rect. 12 6
310 510.44 wind 1.0 270 > th dose independent rect. 13 4
313 510.78 precipitation 0.1 270 < th dose independent rect. 12 6
314 510.78 precipitation 0.1 270 < th dose dependent rect. 12 6
316 511.23 radiation 1.0 90 < th dose dependent rect. 11 17
317 511.42 radiation 1.0 90 < th dose dependent rect. 9 19
326 511.86 wind 9.0 270 < th dose independent rect. 18 18
331 512.35 atmosphere 1010.0 270 < th dose independent rect. 12 6
333 512.36 temperature 10.0 270 > th dose independent rect. 12 6
348 514.33 temperature 10.0 270 > th dose dependent rect. 7 5
350 514.52 wind 1.0 270 > th dose independent rect. 12 6
355 514.99 humidity 50.0 270 > th dose independent rect. 17 20
372 516.90 atmosphere 995.0 270 > th dose independent rect. 18 18
384 517.98 atmosphere 1015.0 270 < th dose independent rect. 18 18
391 519.73 atmosphere 995.0 270 > th dose independent rect. 17 20
396 520.43 humidity 50.0 270 > th dose independent rect. 18 18
486 525.64 radiation 40.0 90 < th dose independent rect. 13 6
505 527.67 precipitation 0.1 270 < th dose independent rect. 17 20
506 527.67 precipitation 0.1 270 < th dose dependent rect. 17 20
509 528.01 atmosphere 995.0 270 > th dose independent rect. 13 4
520 528.94 temperature 10.0 10 > th dose dependent rect. 20 18
523 529.12 temperature 10.0 270 > th dose dependent rect. 13 4
555 532.01 precipitation 0.1 270 < th dose independent rect. 18 18
556 532.01 precipitation 0.1 270 < th dose dependent rect. 18 18
594 534.35 humidity 50.0 90 > th dose dependent rect. 19 9
595 534.37 wind 9.0 270 < th dose dependent rect. 7 6
603 535.21 radiation 40.0 90 < th dose independent rect. 14 18
617 536.97 wind 1.0 270 > th dose independent rect. 17 9
643 538.22 temperature 10.0 270 > th dose dependent rect. 12 6
658 538.88 atmosphere 995.0 270 > th dose independent rect. 12 6
683 540.69 temperature 15.0 270 > th dose independent rect. 7 15
687 540.98 temperature 10.0 270 > th dose dependent rect. 14 2
727 543.63 humidity 90.0 270 < th dose independent rect. 13 4
730 543.90 humidity 50.0 270 > th dose independent rect. 8 3
758 545.32 radiation 40.0 90 < th dose independent rect. 4 15
777 546.85 atmosphere 1015.0 90 < th dose dependent rect. 19 9
871 552.72 wind 1.0 270 > th dose independent rect. 13 17
887 553.88 humidity 90.0 270 < th dose independent rect. 12 6
952 556.96 precipitation 0.1 270 < th dose independent rect. 1 6
953 556.96 precipitation 0.1 270 < th dose dependent rect. 1 6
971 558.47 wind 9.0 10 < th dose independent rect. 8 6
972 558.49 radiation 40.0 10 < th dose dependent rect. 5 14
973 558.54 wind 9.0 10 < th dose independent rect. 14 18
975 558.62 temperature 10.0 10 > th dose independent rect. 8 6
977 558.62 atmosphere 995.0 10 > th dose independent rect. 8 6
978 558.62 atmosphere 1015.0 10 < th dose independent rect. 8 6
979 558.62 precipitation 0.1 10 < th dose independent rect. 8 6
980 558.62 temperature 10.0 10 > th dose independent rect. 14 18
981 558.62 precipitation 0.1 10 < th dose dependent rect. 8 6