Os02g0830200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZmRR2 protein (Response regulator 2).
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Os02g0830200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZmRR2 protein (Response regulator 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.23 | 0.544 | 6.54 | 1.05 | 1.08 | 0.927 | 0.143 | 0.927 | 0.65 | 2.87 | 0.07579 | 5381 | -- | -- |
| 134.82 | 0.541 | 6.55 | 1.04 | 1.08 | 1.06 | 0.145 | -- | 0.657 | 2.89 | 0.2048 | 5380 | -- | -- |
| 134.3 | 0.54 | 6.54 | 1.04 | 1.08 | 0.93 | -- | 0.933 | 0.65 | 2.85 | 0.06777 | 5380 | -- | -- |
| 134.87 | 0.541 | 6.56 | 1.04 | 1.09 | 1.08 | -- | -- | 0.658 | 2.86 | 0.2177 | 5380 | -- | -- |
| 201.61 | 0.661 | 6.53 | 1.08 | -- | 0.867 | -- | 1.31 | 0.669 | -- | 0.1663 | 5179 | -- | -- |
| 157.86 | 0.589 | 6.58 | 1.35 | 1.09 | -- | 0.339 | -- | 0.537 | 2.9 | -- | -- | -- | -- |
| 158.24 | 0.589 | 6.58 | 1.34 | 1.09 | -- | -- | -- | 0.536 | 2.88 | -- | -- | -- | -- |
| 202.56 | 0.663 | 6.55 | 1.05 | -- | 1.09 | -- | -- | 0.685 | -- | 0.2916 | 5211 | -- | -- |
| 160.14 | 0.589 | 6.55 | -- | 1.08 | 1.45 | -- | -- | 0.643 | 2.9 | 0.3263 | 5292 | -- | -- |
| 227.39 | 0.705 | 6.58 | 1.39 | -- | -- | -- | -- | 0.564 | -- | -- | -- | -- | -- |
| 205.82 | 0.671 | 6.62 | -- | 1.12 | -- | -- | -- | 0.386 | 2.89 | -- | -- | -- | -- |
| 228.61 | 0.704 | 6.57 | -- | -- | 1.45 | -- | -- | 0.637 | -- | 0.3639 | 5053 | -- | -- |
| 278.37 | 0.779 | 6.61 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.24 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 124.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 13 | 125.15 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 19 | 125.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 63 | 127.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 83 | 127.92 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 110 | 128.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 115 | 128.64 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 121 | 128.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 18 |
| 122 | 128.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 128 | 128.84 | humidity | 90.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 134 | 128.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 147 | 129.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 148 | 129.02 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 158 | 129.08 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 162 | 129.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 174 | 129.17 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 196 | 129.34 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 229 | 129.50 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 251 | 129.61 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 336 | 130.03 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 339 | 130.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 360 | 130.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 365 | 130.15 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 368 | 130.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 375 | 130.18 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 376 | 130.19 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 377 | 130.19 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 379 | 130.19 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 420 | 130.35 | humidity | 90.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 423 | 130.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 424 | 130.36 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 431 | 130.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 432 | 130.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 457 | 130.44 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 488 | 130.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 492 | 130.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 582 | 130.74 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 660 | 130.90 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 672 | 130.91 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 14 | NA |
| 758 | 131.10 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 861 | 131.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 892 | 131.36 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 903 | 131.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 904 | 131.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 906 | 131.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 916 | 131.41 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 923 | 131.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 928 | 131.43 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 938 | 131.44 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 947 | 131.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |