Os11g0143300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Type-A response regulator.
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Os11g0143300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Type-A response regulator.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.06 | 0.86 | 10.7 | 0.077 | 1.53 | 0.542 | -0.832 | 5.58 | -0.997 | 8.37 | 1025 | 6366 | -- | -- |
| 365.93 | 0.891 | 10.8 | -0.731 | 1.52 | 0.769 | -0.693 | -- | -1.17 | 8.3 | 1031 | 17054 | -- | -- |
| 337.22 | 0.855 | 10.7 | 0.0432 | 1.53 | 0.553 | -- | 5.54 | -0.997 | 8.4 | 1054 | 6356 | -- | -- |
| 367.6 | 0.893 | 10.8 | -0.762 | 1.52 | 0.764 | -- | -- | -1.17 | 8.34 | 1058 | 17062 | -- | -- |
| 466.74 | 1.01 | 10.7 | 1.19e-05 | -- | 0.586 | -- | 5.38 | -0.987 | -- | 1070 | 6181 | -- | -- |
| 376.31 | 0.909 | 10.8 | -0.604 | 1.52 | -- | -0.735 | -- | -1.17 | 8.32 | -- | -- | -- | -- |
| 377.99 | 0.91 | 10.8 | -0.626 | 1.52 | -- | -- | -- | -1.17 | 8.35 | -- | -- | -- | -- |
| 494.31 | 1.04 | 10.8 | -0.784 | -- | 0.761 | -- | -- | -1.16 | -- | 1064 | 11471 | -- | -- |
| 382.06 | 0.91 | 10.8 | -- | 1.51 | 0.567 | -- | -- | -1.08 | 8.38 | 1069 | 17655 | -- | -- |
| 505.63 | 1.05 | 10.8 | -0.617 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 388.31 | 0.922 | 10.8 | -- | 1.51 | -- | -- | -- | -1.1 | 8.38 | -- | -- | -- | -- |
| 509.29 | 1.05 | 10.8 | -- | -- | 0.581 | -- | -- | -1.07 | -- | 1053 | 17201 | -- | -- |
| 515.66 | 1.06 | 10.8 | -- | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 332.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 3 | 332.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 6 | 332.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 7 | 332.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 14 | 333.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 20 | 333.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 28 | 333.41 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 29 | 333.42 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 34 | 333.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 36 | 333.62 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 42 | 333.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 50 | 333.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 60 | 333.94 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 65 | 334.03 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 67 | 334.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 69 | 334.08 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 90 | 334.37 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 93 | 334.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 95 | 334.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 115 | 334.76 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 121 | 334.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 143 | 335.29 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 145 | 335.34 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 169 | 335.61 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 173 | 335.63 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 174 | 335.65 | humidity | 80 | 43200 | > th | dose independent | sin | 4 | NA |
| 183 | 335.76 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 184 | 335.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 193 | 335.94 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 194 | 335.97 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 213 | 336.16 | humidity | 70 | 43200 | > th | dose dependent | sin | 6 | NA |
| 229 | 336.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 242 | 336.34 | humidity | 80 | 43200 | < th | dose independent | sin | 4 | NA |
| 253 | 336.45 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 6 | 7 |
| 283 | 336.71 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 285 | 336.72 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 9 |
| 311 | 336.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 319 | 336.91 | humidity | 60 | 43200 | > th | dose dependent | rect. | 22 | 19 |
| 327 | 336.96 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 333 | 336.97 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 335 | 336.98 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 338 | 337.00 | humidity | 70 | 43200 | > th | dose dependent | sin | 14 | NA |
| 378 | 337.15 | atmosphere | 1015 | 4320 | < th | dose dependent | sin | 3 | NA |
| 458 | 337.36 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 464 | 337.37 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 496 | 337.42 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 509 | 337.45 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 518 | 337.48 | atmosphere | 1010 | 4320 | < th | dose dependent | rect. | 11 | 5 |
| 523 | 337.49 | atmosphere | 995 | 4320 | > th | dose dependent | sin | 2 | NA |
| 524 | 337.49 | atmosphere | 1010 | 4320 | < th | dose dependent | rect. | 12 | 3 |
| 544 | 337.52 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 11 | 5 |
| 653 | 337.69 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 730 | 337.79 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 820 | 337.91 | humidity | 90 | 10 | < th | dose independent | rect. | 21 | 12 |