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Os11g0157600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Timing of CAB expression 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0185) R2 : 0.848
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.08 (0.085) R2dC : 2.94 R2C : -0.615
β3 : -3.51 (0.103) R2dE : 1.46 R2E : -2.09
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0254 (0.0388) R2dN8 : 0.000194 R2N8 : -0.0107
σ : 0.344
deviance : 54.53
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C
peak time of C : 11.5
E
wheather : temperature
threshold : 6.88
memory length : 364
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.83
open length of G : 7.68

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.1 0.346 12.2 0.0751 3.94 -3.42 -0.763 0.762 0.0536 11.5 8.596 365 2.8 7.6
54.2 0.343 12.2 0.0352 3.95 -3.38 -0.353 -- 0.0354 11.5 7.73 367 2.82 7.63
54.66 0.344 12.2 -0.00156 3.95 -3.39 -- -0.235 0.0335 11.5 8.145 366 2.83 7.62
54.6 0.344 12.2 0.0264 4.07 -3.53 -- -- 0.0457 11.5 7.306 366 2.85 7.63
340.25 0.864 12.3 -0.191 -- -0.538 -- 0.326 -0.115 -- 8.145 366 2.83 7.62
126.54 0.527 12.3 -0.143 1.93 -- -0.911 -- -0.123 13.8 -- -- -- --
129.78 0.533 12.3 -0.171 1.93 -- -- -- -0.128 13.8 -- -- -- --
135.99 0.543 12.4 -0.46 -- 2.46 -- -- -0.291 -- 5.679 361 8.4 6.6
54.53 0.344 12.2 -- 4.08 -3.51 -- -- 0.0254 11.5 6.88 364 2.83 7.68
355.12 0.881 12.3 -0.25 -- -- -- -- -0.172 -- -- -- -- --
130.55 0.534 12.3 -- 1.93 -- -- -- -0.109 13.8 -- -- -- --
120.55 0.511 12.2 -- -- 2.35 -- -- 0.00626 -- -22.38 259 9.07 7.45
356.77 0.882 12.3 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.66 temperature 10.0 270 > th dose dependent rect. 3 8
4 60.16 temperature 20.0 270 > th dose independent rect. 5 17
9 63.34 temperature 20.0 270 > th dose independent rect. 4 7
13 64.87 temperature 20.0 270 > th dose independent rect. 5 5
15 65.10 temperature 10.0 90 > th dose dependent rect. 19 16
19 66.14 temperature 15.0 270 > th dose dependent rect. 6 3
28 67.70 radiation 1.0 270 < th dose dependent rect. 21 14
43 69.80 temperature 20.0 10 > th dose dependent rect. 6 6
54 70.94 temperature 15.0 270 > th dose independent rect. 17 17
58 71.08 temperature 15.0 90 > th dose independent rect. 19 16
61 71.25 radiation 1.0 270 < th dose independent rect. 21 14
82 72.70 humidity 60.0 270 > th dose independent rect. 17 16
96 73.86 radiation 1.0 270 < th dose independent rect. 21 10
139 75.84 radiation 20.0 270 < th dose dependent rect. 21 9
143 75.95 temperature 15.0 270 > th dose independent rect. 16 7
144 75.96 atmosphere 1015.0 270 < th dose independent rect. 6 15
147 76.02 wind 7.0 270 < th dose independent rect. 21 9
149 76.10 temperature 10.0 270 > th dose independent rect. 21 9
150 76.10 temperature 30.0 270 < th dose independent rect. 21 9
151 76.10 humidity 50.0 270 > th dose independent rect. 21 9
154 76.10 atmosphere 995.0 270 > th dose independent rect. 21 9
155 76.10 radiation 20.0 270 < th dose independent rect. 21 9
162 76.32 temperature 30.0 270 < th dose independent rect. 17 16
168 76.73 precipitation 0.1 270 < th dose independent rect. 10 7
169 76.73 precipitation 0.1 270 < th dose dependent rect. 10 7
170 76.80 wind 1.0 270 > th dose independent rect. 10 7
177 76.93 wind 9.0 270 < th dose independent rect. 6 15
178 76.95 temperature 10.0 270 > th dose independent rect. 10 7
179 76.95 atmosphere 1015.0 270 < th dose independent rect. 10 7
185 77.17 precipitation 0.1 270 < th dose independent rect. 21 9
187 77.17 precipitation 0.1 270 < th dose dependent rect. 21 9
196 77.32 wind 9.0 270 < th dose independent rect. 17 17
199 77.36 temperature 15.0 270 > th dose independent rect. 17 5
223 77.60 radiation 40.0 270 < th dose independent rect. 17 16
236 77.94 wind 9.0 90 < th dose independent rect. 19 16
237 77.94 atmosphere 995.0 270 > th dose independent rect. 17 17
242 78.06 radiation 1.0 270 < th dose dependent sin 9 NA
252 78.07 humidity 50.0 270 > th dose independent rect. 5 16
259 78.12 radiation 1.0 270 > th dose independent rect. 10 7
263 78.13 atmosphere 995.0 90 > th dose independent rect. 19 16
265 78.15 wind 9.0 270 < th dose independent rect. 10 7
286 78.48 precipitation 0.1 270 < th dose independent rect. 17 17
287 78.48 precipitation 0.1 270 < th dose dependent rect. 17 17
299 78.70 radiation 20.0 270 < th dose dependent rect. 16 6
303 78.74 radiation 40.0 270 < th dose dependent rect. 15 8
322 79.11 radiation 20.0 270 < th dose independent rect. 15 8
325 79.21 temperature 10.0 90 > th dose dependent rect. 6 17
327 79.26 precipitation 0.1 270 < th dose independent rect. 6 15
328 79.26 precipitation 0.1 270 < th dose dependent rect. 6 15
330 79.34 humidity 50.0 270 > th dose independent rect. 16 6
335 79.51 radiation 10.0 270 < th dose independent rect. 16 6
341 79.59 precipitation 0.1 90 < th dose independent rect. 19 16
342 79.59 precipitation 0.1 90 < th dose dependent rect. 19 16
354 79.91 atmosphere 995.0 270 > th dose independent rect. 10 7
408 80.82 wind 1.0 270 > th dose independent rect. 22 7
418 81.07 radiation 1.0 270 > th dose independent rect. 10 19
432 81.21 temperature 20.0 270 > th dose independent rect. 18 3
452 81.56 wind 7.0 270 < th dose independent rect. 4 7
457 81.56 temperature 10.0 270 > th dose independent rect. 23 17
487 81.92 temperature 10.0 270 > th dose independent rect. 22 19
505 82.18 wind 9.0 270 < th dose dependent rect. 5 6
507 82.21 atmosphere 1015.0 270 < th dose independent rect. 17 5
510 82.22 atmosphere 995.0 270 > th dose independent rect. 5 16
512 82.24 temperature 30.0 270 < th dose independent rect. 17 5
519 82.30 precipitation 0.1 270 < th dose independent rect. 23 17
521 82.30 precipitation 0.1 270 < th dose dependent rect. 23 17
526 82.39 temperature 10.0 10 > th dose dependent rect. 6 18
530 82.44 temperature 20.0 270 > th dose independent rect. 19 1
531 82.46 wind 9.0 270 < th dose independent rect. 17 5
539 82.54 precipitation 0.1 270 < th dose independent rect. 22 19
540 82.54 precipitation 0.1 270 < th dose dependent rect. 22 19
541 82.55 wind 9.0 270 < th dose independent rect. 16 7
544 82.65 atmosphere 995.0 270 > th dose independent rect. 17 5
558 82.87 wind 1.0 270 > th dose independent rect. 17 5
561 82.91 radiation 1.0 270 < th dose independent sin 9 NA
565 82.98 atmosphere 995.0 270 > th dose independent rect. 23 17
566 82.99 radiation 1.0 270 > th dose independent sin 9 NA
568 83.05 wind 9.0 270 < th dose independent rect. 23 17
569 83.05 humidity 50.0 270 > th dose dependent rect. 21 8
571 83.08 precipitation 0.1 270 < th dose independent rect. 17 5
572 83.08 temperature 25.0 10 > th dose dependent sin 7 NA
573 83.08 precipitation 0.1 270 < th dose dependent rect. 17 5
575 83.09 atmosphere 1015.0 270 < th dose independent rect. 17 17
577 83.10 wind 9.0 270 < th dose independent rect. 22 19
591 83.20 atmosphere 1015.0 270 < th dose independent rect. 16 7
597 83.35 precipitation 0.1 270 < th dose independent rect. 11 17
598 83.35 precipitation 0.1 270 < th dose dependent rect. 11 17
601 83.38 precipitation 0.1 270 < th dose independent rect. 4 7
602 83.38 precipitation 0.1 270 < th dose dependent rect. 4 7
607 83.42 humidity 50.0 270 > th dose independent rect. 4 7
609 83.43 atmosphere 1015.0 90 < th dose independent rect. 19 16
621 83.50 atmosphere 995.0 270 > th dose independent rect. 16 7
626 83.56 precipitation 0.1 270 < th dose independent rect. 16 7
628 83.56 precipitation 0.1 270 < th dose dependent rect. 16 7
630 83.60 atmosphere 1015.0 270 < th dose independent rect. 22 7
638 83.71 atmosphere 1015.0 270 < th dose independent rect. 23 17
642 83.74 atmosphere 995.0 270 > th dose independent rect. 4 7
643 83.74 atmosphere 1015.0 270 < th dose independent rect. 4 7
644 83.74 temperature 10.0 270 > th dose independent rect. 11 17
648 83.78 wind 1.0 270 > th dose independent rect. 16 7
657 83.88 humidity 50.0 14400 > th dose independent rect. 19 6
680 84.12 wind 1.0 270 > th dose independent rect. 11 17
682 84.14 wind 9.0 270 < th dose independent rect. 11 17
704 84.33 atmosphere 995.0 270 > th dose independent rect. 22 19
715 84.40 atmosphere 1010.0 270 < th dose independent rect. 18 3
735 84.52 temperature 10.0 270 > th dose dependent rect. 17 5
779 84.90 temperature 10.0 270 > th dose dependent rect. 18 3
782 84.93 radiation 1.0 270 > th dose independent rect. 5 5
819 85.12 temperature 10.0 270 > th dose independent rect. 21 21
820 85.12 atmosphere 995.0 270 > th dose dependent rect. 22 7
830 85.19 wind 9.0 270 < th dose independent rect. 18 3
832 85.19 wind 9.0 270 < th dose dependent rect. 22 7
856 85.38 atmosphere 995.0 270 > th dose independent rect. 18 3
919 85.73 wind 1.0 270 > th dose independent rect. 18 3
921 85.74 atmosphere 1010.0 270 < th dose independent rect. 19 1
969 86.00 temperature 10.0 270 > th dose dependent rect. 19 1
984 86.06 radiation 1.0 90 < th dose dependent sin 18 NA
998 86.17 wind 9.0 270 < th dose independent rect. 21 21