BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0157600 Os11g0157600|AK120059
(623 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0157600 Similar to Timing of CAB expression 1 1271 0.0
Os09g0532400 CheY-like domain containing protein 154 2e-37
Os07g0695100 CheY-like domain containing protein 142 1e-33
Os03g0284100 Two-component response regulator-like PRR73 (P... 138 1e-32
Os02g0618200 CheY-like domain containing protein 93 5e-19
Os06g0183100 Similar to Two-component response regulator ARR14 82 1e-15
Os02g0796500 Similar to Two-component response regulator AR... 82 1e-15
Os02g0182100 Similar to Two-component response regulator ARR1 80 6e-15
Os03g0224200 Similar to Response regulator 8 79 8e-15
Os05g0395700 79 1e-14
Os06g0647200 CheY-like domain containing protein 78 2e-14
Os02g0830200 Similar to ZmRR2 protein (Response regulator 2) 69 8e-12
Os02g0631700 Similar to ZmRR2 protein (Response regulator 2) 67 4e-11
>Os11g0157600 Similar to Timing of CAB expression 1
Length = 623
Score = 1271 bits (3289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/623 (98%), Positives = 611/623 (98%)
Query: 1 MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR 60
MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR
Sbjct: 1 MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR 60
Query: 61 CMQKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASENNAASNHLSANGGNGSKTGE 120
CMQKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASENNAASNHLSANGGNGSKTGE
Sbjct: 61 CMQKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASENNAASNHLSANGGNGSKTGE 120
Query: 121 HSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREHKIQNGFIDGMNTKSHALKGN 180
HSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREHKIQNGFIDGMNTKSHALKGN
Sbjct: 121 HSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREHKIQNGFIDGMNTKSHALKGN 180
Query: 181 DDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAGQIMDNALRFADSSSLRSSDPGK 240
DDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAGQIMDNALRFADSSSLRSSDPGK
Sbjct: 181 DDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAGQIMDNALRFADSSSLRSSDPGK 240
Query: 241 DLLVVAQTTADRKCKSSALENNAVMENNLSENSKGTATGHAESCPSHFVEINLEKQHHLN 300
DLLVVAQTTADRKCKSSALENNAVMENNLSENSKGTATGHAESCPSHFVEINLEKQHHLN
Sbjct: 241 DLLVVAQTTADRKCKSSALENNAVMENNLSENSKGTATGHAESCPSHFVEINLEKQHHLN 300
Query: 301 GYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVL 360
GYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVL
Sbjct: 301 GYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVL 360
Query: 361 LSCEHNTRESTVQAQVPLDRSTEGAAILCSSSVREDAGTSSSSPRKDSLTHPSYGFXXXX 420
LSCEHNTRESTVQAQVPLDRSTEGAAILCSSSVREDAGTSSSSPRKDSLTHPSYGF
Sbjct: 361 LSCEHNTRESTVQAQVPLDRSTEGAAILCSSSVREDAGTSSSSPRKDSLTHPSYGFIPVP 420
Query: 421 XXXXXXXXYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEH 480
YHYGAIMQPMYYPQGAFMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEH
Sbjct: 421 IPVGAAIPYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEH 480
Query: 481 KQPEENHQLHHSRQILRESGEPVDLAKAHMERINQSASCSQDIRKGSGCTGSGETDANTN 540
KQPEENHQLHHSRQILRESGEPVDLAKAHMERINQSASCSQDIRKGSGCTGSGETDANTN
Sbjct: 481 KQPEENHQLHHSRQILRESGEPVDLAKAHMERINQSASCSQDIRKGSGCTGSGETDANTN 540
Query: 541 TVIALESGNESGVQNCSNNVLDGDRSRREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQR 600
TVIALESGNESGVQNCSNNVLDGDRSRREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQR
Sbjct: 541 TVIALESGNESGVQNCSNNVLDGDRSRREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQR 600
Query: 601 PRVKGQFVSQKLKSAITTEAETD 623
PRVKGQFVSQKLKSAITTEAETD
Sbjct: 601 PRVKGQFVSQKLKSAITTEAETD 623
>Os09g0532400 CheY-like domain containing protein
Length = 623
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 99/154 (64%), Gaps = 13/154 (8%)
Query: 1 MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR 60
+KAW +++E+++ DLVLTEV +P +SG LLS I+ D CKNIPVIMMSS DS+ V +
Sbjct: 76 VKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFK 135
Query: 61 CMQKGAVDFLVKPVRKNELRNLWQHVWRRH----AMNSQTNASENNAASNHLSANGGNGS 116
CM KGA DFLVKP+RKNELRNLWQHVWR+ ++ Q E+N H G +
Sbjct: 136 CMLKGAADFLVKPIRKNELRNLWQHVWRKQLSSGVLDVQHTQQEDNLTERHEQKTGVTKA 195
Query: 117 ---------KTGEHSDEESDAQSSGSKREVEIQS 141
K E S++ESDAQSS ++ E+E S
Sbjct: 196 EHVTENVVHKNMECSEQESDAQSSCTRSELEADS 229
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 24/192 (12%)
Query: 429 YHYGAIMQPMYYPQGA--FMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEHKQPEEN 486
+ GA + ++YPQ A + ++ Q +S Q N ++ Q++ ++
Sbjct: 439 FWNGAPVASLFYPQSAPPIWNSKTSTWQDATTQAISLQQNGPKDTDTK-QVENVEEQTAR 497
Query: 487 HQLHHSRQILR---ESGEPVDLAKAHMERINQSASCSQDIRK---GSGCTGSGETDANTN 540
L +R+ LR + EP ++ E + S++ RK GS C D+++N
Sbjct: 498 SHLSANRKHLRIEIPTDEPRHVSPTTGE--SGSSTVLDSARKTLSGSVC------DSSSN 549
Query: 541 TVIALESGNESGVQNCSNNVLDGDR--SRREAALLKFRMKRKDRCFEKKVRYHSRKKLAE 598
+IA + +N DG R S+REAAL KFR+KRKDRCFEKKVRY SRK LAE
Sbjct: 550 HMIAPTESSNVVPENP-----DGLRHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAE 604
Query: 599 QRPRVKGQFVSQ 610
QRPRVKGQFV Q
Sbjct: 605 QRPRVKGQFVRQ 616
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 104/172 (60%), Gaps = 22/172 (12%)
Query: 2 KAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRC 61
+AW + + + DLVLTEV MP +SGI LLSRI+ + CKNIPVIMMSS D++GTV +C
Sbjct: 96 QAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKC 155
Query: 62 MQKGAVDFLVKPVRKNELRNLWQHVWRR-HAMNSQTNASENNAASNHLSANG-------- 112
+ KGAVDFLVKP+RKNEL+NLWQHVWRR H+ + + S S +G
Sbjct: 156 LSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNNG 215
Query: 113 ------------GNGSKTGEHSDEESDAQSSGSKREVEIQSAEKL-PEVVAD 151
G ++ G + + AQSS +KR VEI S + + P+ +AD
Sbjct: 216 SNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQAMSPDQLAD 267
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 565 RSRREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQRPRVKGQFVSQKL 612
R R AA++KFR KRK+R F KKVRY SRK+LAEQRPRV+GQFV Q +
Sbjct: 679 REHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAV 726
>Os03g0284100 Two-component response regulator-like PRR73 (Pseudo-response
regulator 73) (OsPRR73)
Length = 767
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 104/174 (59%), Gaps = 31/174 (17%)
Query: 1 MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR 60
+ AW + + DLVLTEV MP LSGI LLS+I + CK+IPVIMMSS DS+GTV +
Sbjct: 114 LHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFK 173
Query: 61 CMQKGAVDFLVKPVRKNELRNLWQHVWRR----------HAMNSQT-------NASENNA 103
C+ KGAVDFLVKP+RKNEL+NLWQHVWRR + +Q + ENN+
Sbjct: 174 CLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNS 233
Query: 104 ASNHLSANG------------GNGSKTGEHSDEESDAQSSGSKREVEIQSAEKL 145
SN+ + + G+ ++ G SD S QSS +KR VEI S +++
Sbjct: 234 GSNNDNEDDDDNDEDDDDLSVGHNARDG--SDNGSGTQSSWTKRAVEIDSPQQM 285
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 568 REAALLKFRMKRKDRCFEKKVRYHSRKKLAEQRPRVKGQFVSQ 610
REAAL KFR KRK R F KKVRY SRK+LAEQRPR++GQFV Q
Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQ 754
>Os02g0618200 CheY-like domain containing protein
Length = 518
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 6 VMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKG 65
V+ A D++L EV +P ++L I + E ++IP+IMMS++D + V++C++ G
Sbjct: 66 VLNCEAGEIDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLG 125
Query: 66 AVDFLVKPVRKNELRNLWQHVWRRHAM 92
A ++LVKP+R NEL NLW HVWRR M
Sbjct: 126 AAEYLVKPLRMNELLNLWTHVWRRRRM 152
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 567 RREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQRPRVKGQFVSQKLKSAITT 618
RR AAL KFR+KRK+RCF+KKVRY +RKKLAE RPRV+GQFV Q + IT+
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQANYTDITS 493
>Os06g0183100 Similar to Two-component response regulator ARR14
Length = 696
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 1 MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLR 60
+ A ++RE FDLV+++V MP + G +LL + ++PVIM+S TV++
Sbjct: 59 ITALKLLRENRDMFDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSVNGETKTVMK 115
Query: 61 CMQKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTN 97
+ GA D+L+KPVR ELRN+WQHV RR N + N
Sbjct: 116 GITHGACDYLLKPVRIEELRNIWQHVVRRKFGNRERN 152
>Os02g0796500 Similar to Two-component response regulator ARR11 (Receiver-like
protein 3)
Length = 688
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 23/165 (13%)
Query: 3 AWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCM 62
A ++RE FDLV+++V MP + G +LL + ++PVIM+S TVL+ +
Sbjct: 59 ALKMLRENRDMFDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSVNGETKTVLKGI 115
Query: 63 QKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASEN---------NAASNHLSANGG 113
GA D+L+KPVR ELRN+WQHV RR +++ A+ + NA S+H+ +
Sbjct: 116 THGACDYLLKPVRIEELRNIWQHVIRRK-FSTRDRANLDFYEECNKPPNADSDHVHGHVT 174
Query: 114 NGS---------KTGEHSDEESDAQSSGSKREVEIQSAEKLPEVV 149
GS K E+ EE D + + ++++ SA K P VV
Sbjct: 175 CGSPDQSGRPSKKRKEYCSEEED-EGEVNTQDIDDPSAPKKPRVV 218
>Os02g0182100 Similar to Two-component response regulator ARR1
Length = 626
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 3 AWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCM 62
A ++RE FDLV+++V MP + G +LL + ++PVIM+S+ TV++ +
Sbjct: 64 ALKLLRENKDQFDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSANGETQTVMKGI 120
Query: 63 QKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASENNAA 104
GA D+L+KPVR +LR +WQHV RR +++ ++++A
Sbjct: 121 THGACDYLLKPVRLEQLRTIWQHVIRRKNCDAKNRGNDDDAG 162
>Os03g0224200 Similar to Response regulator 8
Length = 691
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 2 KAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRC 61
+A ++RE FD+++++V MP + G LL + ++PVIMMS+ V++
Sbjct: 50 RALTMLRENRRGFDVIISDVHMPDMDGFRLLELVGLE---MDLPVIMMSADSRTDIVMKG 106
Query: 62 MQKGAVDFLVKPVRKNELRNLWQHVWRR 89
++ GA D+L+KPVR EL+N+WQHV R+
Sbjct: 107 IKHGACDYLIKPVRMEELKNIWQHVIRK 134
>Os05g0395700
Length = 368
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 7 MRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGA 66
+ E +++D+VLTEV P +GI+ + + + ++PV++ S+ D TVL+C+ GA
Sbjct: 81 LHENPWSYDMVLTEVHAP--AGIDGFNLLQYAGTDMDLPVVVFSADDDKRTVLKCVNSGA 138
Query: 67 VDFLVKPVRKNELRNLWQHVWRR 89
D+LVKP+R EL+N+WQHV+RR
Sbjct: 139 CDYLVKPLRHEELKNIWQHVYRR 161
>Os06g0647200 CheY-like domain containing protein
Length = 663
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 6 VMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKG 65
++RER FDLV+++V M + G +LL I ++PVIM S+ + T+++ + G
Sbjct: 69 MLRERPGDFDLVISDVHMLDMDGFKLLELIGLE---MDLPVIMQSANGELETMMKGVTHG 125
Query: 66 AVDFLVKPVRKNELRNLWQHVWRRHAMN 93
A D+LVKPV +++N+WQHVWR+ ++
Sbjct: 126 ACDYLVKPVSLKDIQNIWQHVWRKRKLD 153
>Os02g0830200 Similar to ZmRR2 protein (Response regulator 2)
Length = 131
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 50/71 (70%)
Query: 16 LVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGAVDFLVKPVR 75
+++T+ MP ++G +LL R+ S E K IPV++MSS++S + RC+++GA DFL+KPVR
Sbjct: 58 MIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVR 117
Query: 76 KNELRNLWQHV 86
+++ L V
Sbjct: 118 PSDVSRLCNRV 128
>Os02g0631700 Similar to ZmRR2 protein (Response regulator 2)
Length = 147
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 50/71 (70%)
Query: 16 LVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGAVDFLVKPVR 75
+++T+ MP ++G ELL ++ S + K IPV++MSS++ + RC+++GA DFLVKPVR
Sbjct: 75 MIITDYWMPEMTGYELLKKVKESSKLKKIPVVIMSSENVPTRISRCLEEGAEDFLVKPVR 134
Query: 76 KNELRNLWQHV 86
+++ L+ V
Sbjct: 135 PSDVSRLFSRV 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.125 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,555,156
Number of extensions: 870105
Number of successful extensions: 2650
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 22
Length of query: 623
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 516
Effective length of database: 11,448,903
Effective search space: 5907633948
Effective search space used: 5907633948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)