Os02g0182100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator ARR1.
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Os02g0182100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-component response regulator ARR1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.07 | 0.326 | 11.7 | 0.606 | 0.612 | 0.905 | 0.106 | 0.722 | 0.0215 | 3.64 | 8.286 | 611 | -- | -- |
| 48.46 | 0.324 | 11.7 | 0.482 | 0.614 | 0.917 | 0.0743 | -- | -0.0118 | 3.61 | 8.062 | 600 | -- | -- |
| 48.1 | 0.323 | 11.7 | 0.602 | 0.608 | 0.901 | -- | 0.705 | 0.0208 | 3.63 | 8.279 | 616 | -- | -- |
| 48.48 | 0.324 | 11.7 | 0.48 | 0.613 | 0.916 | -- | -- | -0.0121 | 3.62 | 7.966 | 602 | -- | -- |
| 59.79 | 0.36 | 11.7 | 0.607 | -- | 0.939 | -- | 0.799 | 0.0205 | -- | 3.084 | 1057 | -- | -- |
| 58.46 | 0.358 | 11.7 | 0.7 | 0.529 | -- | 0.0416 | -- | 0.127 | 2.13 | -- | -- | -- | -- |
| 58.47 | 0.358 | 11.7 | 0.699 | 0.529 | -- | -- | -- | 0.127 | 2.13 | -- | -- | -- | -- |
| 60.33 | 0.362 | 11.7 | 0.446 | -- | 0.947 | -- | -- | -0.022 | -- | 6.544 | 1052 | -- | -- |
| 53.88 | 0.342 | 11.7 | -- | 0.652 | 1.12 | -- | -- | -0.0831 | 3.82 | 14.34 | 615 | -- | -- |
| 75.21 | 0.405 | 11.7 | 0.721 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 71.36 | 0.395 | 11.7 | -- | 0.542 | -- | -- | -- | 0.0487 | 2.16 | -- | -- | -- | -- |
| 64.92 | 0.375 | 11.7 | -- | -- | 1.13 | -- | -- | -0.0976 | -- | 6.846 | 1072 | -- | -- |
| 88.94 | 0.44 | 11.7 | -- | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 17 | 47.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 67 | 47.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 86 | 48.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 87 | 48.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 102 | 48.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 108 | 48.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 114 | 48.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 134 | 48.26 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 135 | 48.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 142 | 48.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 156 | 48.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 168 | 48.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 202 | 48.41 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 321 | 48.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 393 | 48.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 438 | 48.75 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 439 | 48.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 464 | 48.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 474 | 48.80 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 480 | 48.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 484 | 48.81 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 485 | 48.81 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 507 | 48.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 551 | 48.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 623 | 48.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 633 | 48.94 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 635 | 48.94 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 650 | 48.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 663 | 48.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 670 | 48.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 701 | 48.99 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 739 | 49.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 806 | 49.04 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 891 | 49.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 930 | 49.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |