Os03g0224200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Response regulator 8.
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Os03g0224200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Response regulator 8.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.38 | 0.237 | 11.8 | 0.398 | 0.836 | -0.403 | -0.32 | 0.417 | 0.315 | 0.649 | 10.01 | 1482 | -- | -- |
| 25.51 | 0.235 | 11.8 | 0.364 | 0.818 | -0.453 | -0.244 | -- | 0.307 | 0.651 | 10.01 | 1544 | -- | -- |
| 25.63 | 0.236 | 11.8 | 0.42 | 0.815 | -0.422 | -- | 0.499 | 0.315 | 0.48 | 10.04 | 1544 | -- | -- |
| 25.93 | 0.237 | 11.8 | 0.362 | 0.818 | -0.451 | -- | -- | 0.308 | 0.628 | 10.01 | 1544 | -- | -- |
| 37.96 | 0.289 | 11.8 | 0.287 | -- | -0.611 | -- | 0.33 | 0.171 | -- | 10.01 | 1720 | -- | -- |
| 29.71 | 0.256 | 11.8 | 0.214 | 0.847 | -- | -0.399 | -- | 0.174 | 0.637 | -- | -- | -- | -- |
| 30.39 | 0.258 | 11.8 | 0.229 | 0.848 | -- | -- | -- | 0.176 | 0.616 | -- | -- | -- | -- |
| 33.68 | 0.271 | 11.8 | 0.258 | -- | -0.609 | -- | -- | 0.214 | -- | 1.7 | 1714 | -- | -- |
| 28.69 | 0.249 | 11.8 | -- | 0.844 | -0.322 | -- | -- | 0.228 | 0.59 | 19.69 | 1651 | -- | -- |
| 75.44 | 0.406 | 11.8 | 0.259 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 31.77 | 0.264 | 11.8 | -- | 0.851 | -- | -- | -- | 0.151 | 0.629 | -- | -- | -- | -- |
| 35.44 | 0.278 | 11.8 | -- | -- | -0.609 | -- | -- | 0.186 | -- | 1.7 | 1714 | -- | -- |
| 77.21 | 0.41 | 11.8 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.90 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 2 | 22.97 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 6 | 23.25 | radiation | 1 | 30 | > th | dose independent | sin | 23 | NA |
| 7 | 23.35 | radiation | 1 | 30 | < th | dose independent | sin | 23 | NA |
| 8 | 23.42 | radiation | 1 | 30 | < th | dose dependent | sin | 23 | NA |
| 12 | 23.56 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 16 | 23.64 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 30 | 23.85 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 40 | 23.97 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 12 |
| 46 | 24.03 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 47 | 24.06 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 7 |
| 62 | 24.07 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 9 |
| 85 | 24.22 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 9 |
| 90 | 24.24 | radiation | 1 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 95 | 24.30 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 5 |
| 99 | 24.33 | radiation | 10 | 720 | < th | dose dependent | sin | 18 | NA |
| 109 | 24.37 | radiation | 1 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 130 | 24.44 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 9 |
| 141 | 24.48 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 9 |
| 146 | 24.51 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 157 | 24.54 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 168 | 24.58 | radiation | 10 | 720 | > th | dose independent | sin | 17 | NA |
| 268 | 24.74 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 2 |
| 335 | 24.84 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 13 |
| 341 | 24.85 | radiation | 1 | 30 | < th | dose independent | rect. | 3 | 17 |
| 349 | 24.87 | radiation | 1 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 414 | 24.99 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 474 | 25.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 498 | 25.07 | humidity | 50 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 513 | 25.10 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 4 |
| 549 | 25.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 550 | 25.13 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 4 |
| 566 | 25.15 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 21 |
| 593 | 25.17 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 635 | 25.21 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 5 |
| 724 | 25.28 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 6 |
| 771 | 25.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 783 | 25.33 | humidity | 70 | 30 | > th | dose independent | rect. | 3 | 17 |
| 822 | 25.36 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 5 |
| 839 | 25.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 900 | 25.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 912 | 25.41 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 941 | 25.43 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 945 | 25.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 946 | 25.44 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 9 |
| 961 | 25.45 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 5 |
| 964 | 25.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 977 | 25.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 991 | 25.46 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 992 | 25.46 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 20 |