Os02g0618200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CheY-like domain containing protein.
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Os02g0618200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CheY-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.54 | 0.701 | 9.17 | 0.833 | 6.87 | -1.76 | -0.601 | 1.81 | -0.318 | 14.4 | 24.4 | 131 | 2.87 | 10.5 |
| 228.62 | 0.704 | 9.17 | 0.723 | 6.9 | -1.82 | -0.0565 | -- | -0.341 | 14.4 | 24.25 | 130 | 2.87 | 10.6 |
| 222.4 | 0.695 | 9.17 | 0.829 | 6.86 | -1.83 | -- | 1.51 | -0.293 | 14.4 | 24.2 | 138 | 2.71 | 10.6 |
| 228.31 | 0.704 | 9.18 | 0.656 | 6.88 | -1.83 | -- | -- | -0.363 | 14.3 | 24.2 | 131 | 2.83 | 10.6 |
| 2560.6 | 2.37 | 9.27 | 0.592 | -- | -0.663 | -- | 2.24 | -0.75 | -- | 23.71 | 4285 | 2.6 | 10.4 |
| 343.24 | 0.869 | 9.32 | 0.377 | 6.31 | -- | -0.538 | -- | -0.806 | 15.1 | -- | -- | -- | -- |
| 344.2 | 0.869 | 9.32 | 0.365 | 6.31 | -- | -- | -- | -0.809 | 15.1 | -- | -- | -- | -- |
| 2552.2 | 2.36 | 9.31 | 0.312 | -- | -0.79 | -- | -- | -0.848 | -- | 22.9 | 4291 | 1.72 | 11.8 |
| 238.56 | 0.719 | 9.21 | -- | 6.89 | -1.72 | -- | -- | -0.42 | 14.4 | 24.3 | 130 | 2.85 | 10.6 |
| 2620.67 | 2.39 | 9.34 | 0.0962 | -- | -- | -- | -- | -0.973 | -- | -- | -- | -- | -- |
| 347.71 | 0.872 | 9.33 | -- | 6.31 | -- | -- | -- | -0.849 | 15.1 | -- | -- | -- | -- |
| 2554.73 | 2.36 | 9.32 | -- | -- | -0.77 | -- | -- | -0.885 | -- | 22.9 | 4291 | 1.72 | 11.8 |
| 2620.92 | 2.39 | 9.34 | -- | -- | -- | -- | -- | -0.984 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 10 |
| 21 | 244.84 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 11 |
| 49 | 251.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 69 | 254.23 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 70 | 254.48 | temperature | 15.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 81 | 255.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 120 | 259.47 | temperature | 20.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 126 | 259.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 14 |
| 133 | 260.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 161 | 262.01 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 164 | 262.05 | temperature | 30.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 165 | 262.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 167 | 262.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 168 | 262.05 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 173 | 262.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 175 | 262.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 180 | 262.24 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 14 |
| 181 | 262.24 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 185 | 262.55 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 227 | 264.96 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 229 | 265.11 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 245 | 266.24 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 10 |
| 246 | 266.24 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 284 | 267.34 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 6 |
| 285 | 267.35 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 7 |
| 286 | 267.35 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 12 |
| 297 | 267.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 298 | 267.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 301 | 268.07 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 322 | 268.85 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 330 | 269.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 331 | 269.18 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 350 | 269.86 | temperature | 25.0 | 30 | > th | dose independent | sin | 4 | NA |
| 358 | 270.27 | temperature | 25.0 | 30 | < th | dose independent | sin | 4 | NA |
| 366 | 270.52 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 373 | 270.90 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 396 | 271.67 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 402 | 271.89 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 410 | 272.13 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 413 | 272.19 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 429 | 272.74 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 432 | 272.80 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 11 |
| 542 | 275.41 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 582 | 275.97 | radiation | 10.0 | 10 | < th | dose independent | rect. | 19 | 12 |
| 589 | 276.02 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 592 | 276.09 | wind | 7.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 597 | 276.21 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 641 | 276.86 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 672 | 277.16 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 677 | 277.25 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 695 | 277.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 697 | 277.47 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 700 | 277.47 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 706 | 277.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 5 |
| 707 | 277.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 5 |
| 708 | 277.57 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 723 | 277.75 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 14 | 5 |
| 728 | 277.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 745 | 278.01 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 777 | 278.52 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 794 | 278.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 825 | 279.25 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 859 | 279.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 11 |
| 868 | 280.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 11 |
| 869 | 280.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 11 |
| 870 | 280.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 11 |
| 872 | 280.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 11 |
| 877 | 280.11 | temperature | 15.0 | 30 | > th | dose independent | rect. | 19 | 12 |
| 893 | 280.19 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 898 | 280.30 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 918 | 280.64 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 17 |
| 933 | 280.78 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 976 | 281.08 | radiation | 40.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 994 | 281.21 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 998 | 281.24 | radiation | 20.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 999 | 281.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 10 |
| 1000 | 281.24 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 19 |