BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0618200 Os02g0618200|AK111828
(518 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0618200 CheY-like domain containing protein 894 0.0
Os09g0532400 CheY-like domain containing protein 116 4e-26
Os07g0695100 CheY-like domain containing protein 113 4e-25
Os03g0284100 Two-component response regulator-like PRR73 (P... 105 1e-22
Os11g0157600 Similar to Timing of CAB expression 1 92 7e-19
Os03g0224200 Similar to Response regulator 8 89 6e-18
Os06g0647200 CheY-like domain containing protein 89 9e-18
Os02g0182100 Similar to Two-component response regulator ARR1 87 4e-17
Os02g0796500 Similar to Two-component response regulator AR... 84 2e-16
Os06g0183100 Similar to Two-component response regulator ARR14 84 2e-16
Os05g0395700 78 1e-14
>Os02g0618200 CheY-like domain containing protein
Length = 518
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/497 (87%), Positives = 434/497 (87%)
Query: 22 FVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEV 81
FVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEV
Sbjct: 22 FVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEV 81
Query: 82 DLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLN 141
DLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLN
Sbjct: 82 DLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLN 141
Query: 142 LWTHVWRRRRMLGLSEKNFFNDNFELALSEPSDAXXXXXXXXXXXXXXKPKENINQETST 201
LWTHVWRRRRMLGLSEKNFFNDNFELALSEPSDA KPKENINQETST
Sbjct: 142 LWTHVWRRRRMLGLSEKNFFNDNFELALSEPSDANTNSTTLLSDDTDDKPKENINQETST 201
Query: 202 SNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQASSPGVMFSRPIKTNLRVAESSAFLAY 261
SNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQASSPGVMFSRPIKTNLRVAESSAFLAY
Sbjct: 202 SNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQASSPGVMFSRPIKTNLRVAESSAFLAY 261
Query: 262 VKSSTPTTSSFDSELQKGGNRLDSSDHRGNFXXXXXXXXXXXXVNIRDKEAFEMPVQYPV 321
VKSSTPTTSSFDSELQKGGNRLDSSDHRGNF VNIRDKEAFEMPVQYPV
Sbjct: 262 VKSSTPTTSSFDSELQKGGNRLDSSDHRGNFSSTTDRSDTGTDVNIRDKEAFEMPVQYPV 321
Query: 322 VCFSSSNLHLERSNEGQNDASGTPPVYHFPFYYPGMMDHGMTHPPVQNFQGNINNAQVHT 381
VCFSSSNLHLERSNEGQNDASGTPPVYHFPFYYPGMMDHGMTHPPVQNFQGNINNAQVHT
Sbjct: 322 VCFSSSNLHLERSNEGQNDASGTPPVYHFPFYYPGMMDHGMTHPPVQNFQGNINNAQVHT 381
Query: 382 PQTLLPQYNVYPQCHGVSMMPPFQYNPAGMSIQSNQLPTQNMWPQASSTPMPEETCSRSX 441
PQTLLPQYNVYPQCHGVSMMPPFQYNPAGMSIQSNQLPTQNMWPQASSTPMPEETCSRS
Sbjct: 382 PQTLLPQYNVYPQCHGVSMMPPFQYNPAGMSIQSNQLPTQNMWPQASSTPMPEETCSRSE 441
Query: 442 XXXXXXXXXXXXXXXXCFDKKVRYVNRKKLAETRPRVRGQFVRQANYTDITXXXXXXXXX 501
CFDKKVRYVNRKKLAETRPRVRGQFVRQANYTDIT
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQANYTDITSTGDDISED 501
Query: 502 XXXXXXXXXXXMVSSPE 518
MVSSPE
Sbjct: 502 EDDDPSSREVEMVSSPE 518
>Os09g0532400 CheY-like domain containing protein
Length = 623
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 83/131 (63%)
Query: 25 RSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLP 84
R VR+LL + D S+ + LL C Y+V A + ++L ++ ID++L EV+LP
Sbjct: 40 RMPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELP 99
Query: 85 VSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWT 144
+ F +L I + ++IP+IMMS+ D VS+V KC+ GAA++LVKP+R NEL NLW
Sbjct: 100 LMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQ 159
Query: 145 HVWRRRRMLGL 155
HVWR++ G+
Sbjct: 160 HVWRKQLSSGV 170
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 80/130 (61%)
Query: 20 QQFVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILA 79
++F+ + +++LL DSD S+ + V LL +C Y+V A++ +Q L ID++L
Sbjct: 54 ERFIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLT 113
Query: 80 EVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNEL 139
EV +P +L I + ++IP+IMMS+ D + V KCL GA ++LVKP+R NEL
Sbjct: 114 EVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNEL 173
Query: 140 LNLWTHVWRR 149
NLW HVWRR
Sbjct: 174 KNLWQHVWRR 183
>Os03g0284100 Two-component response regulator-like PRR73 (Pseudo-response
regulator 73) (OsPRR73)
Length = 767
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 76/130 (58%)
Query: 20 QQFVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILA 79
++F+ +R+LL ++D S+ + V LL C Y+V A++ L ID++L
Sbjct: 73 ERFLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLT 132
Query: 80 EVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNEL 139
EV +P +L I +K + IP+IMMS+ D + V KCL GA ++LVKP+R NEL
Sbjct: 133 EVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNEL 192
Query: 140 LNLWTHVWRR 149
NLW HVWRR
Sbjct: 193 KNLWQHVWRR 202
>Os11g0157600 Similar to Timing of CAB expression 1
Length = 623
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 66 VLNCEAGEIDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLG 125
V+ A D++L EV +P ++L I + E ++IP+IMMS++D + V++C++ G
Sbjct: 6 VMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKG 65
Query: 126 AAEYLVKPLRMNELLNLWTHVWRRRRM 152
A ++LVKP+R NEL NLW HVWRR M
Sbjct: 66 AVDFLVKPVRKNELRNLWQHVWRRHAM 92
>Os03g0224200 Similar to Response regulator 8
Length = 691
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
+++L+ D DP+ + R+L C Y T + + +L D+I+++V +P
Sbjct: 16 MKVLVVDDDPTCLAVLKRMLLECRYDATTCSQATRALTMLRENRRGFDVIISDVHMPDMD 75
Query: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVW 147
F++L+ + +L P+IMMS +V+K ++ GA +YL+KP+RM EL N+W HV
Sbjct: 76 GFRLLELVGLEMDL---PVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKNIWQHVI 132
Query: 148 RRRRMLGLSEKNFFNDNFE 166
R++ FN+N E
Sbjct: 133 RKK----------FNENKE 141
>Os06g0647200 CheY-like domain containing protein
Length = 663
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
+R+L D P + LL C YQ T + + +L G+ D+++++V +
Sbjct: 31 LRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGDFDLVISDVHMLDMD 90
Query: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVW 147
FK+L+ I +L P+IM S E+ ++K + GA +YLVKP+ + ++ N+W HVW
Sbjct: 91 GFKLLELIGLEMDL---PVIMQSANGELETMMKGVTHGACDYLVKPVSLKDIQNIWQHVW 147
Query: 148 RRRRMLGLSEKNFFNDNFEL 167
R+R++ + +ND EL
Sbjct: 148 RKRKLDIRNHNGGYNDGGEL 167
>Os02g0182100 Similar to Two-component response regulator ARR1
Length = 626
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
+R+L D DP+ + + LL C Y VT + +L + D+++++V +P
Sbjct: 29 MRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLRENKDQFDLVISDVHMPDMD 88
Query: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVW 147
FK+L+ + +L P+IM+S E V+K + GA +YL+KP+R+ +L +W HV
Sbjct: 89 GFKLLELVGLEMDL---PVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRTIWQHVI 145
Query: 148 RRR 150
RR+
Sbjct: 146 RRK 148
>Os02g0796500 Similar to Two-component response regulator ARR11 (Receiver-like
protein 3)
Length = 688
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
+R+L D DP + + LL C Y VT + +L D+++++V +P
Sbjct: 24 MRVLAVDDDPVCLKVLETLLLRCQYHVTTTNQAAIALKMLRENRDMFDLVISDVHMPDMD 83
Query: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVW 147
FK+L+ + +L P+IM+S E V+K + GA +YL+KP+R+ EL N+W HV
Sbjct: 84 GFKLLELVGLEMDL---PVIMLSVNGETKTVLKGITHGACDYLLKPVRIEELRNIWQHVI 140
Query: 148 RRR 150
RR+
Sbjct: 141 RRK 143
>Os06g0183100 Similar to Two-component response regulator ARR14
Length = 696
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
+R+L D DP + + LL C Y VT + +L D+++++V +P
Sbjct: 26 MRVLAVDDDPVCLKVLETLLRRCQYHVTSTNQAITALKLLRENRDMFDLVISDVHMPDMD 85
Query: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVW 147
FK+L+ + +L P+IM+S E V+K + GA +YL+KP+R+ EL N+W HV
Sbjct: 86 GFKLLELVGLEMDL---PVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQHVV 142
Query: 148 RRRRMLGLSEKNFFNDNFELALSEPSDA 175
RR+ G E+N N +F ++P A
Sbjct: 143 RRK--FGNRERN--NLDFSKECNKPQSA 166
>Os05g0395700
Length = 368
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 28 VRILLCDSDPSSSREVLRLLCNCSY-----------------QVTCAKSPRQVINVLNCE 70
+R+LL D + + + +LL NC Y +VT + R + L+
Sbjct: 25 MRVLLIDESTTYLKIITKLLLNCGYKGLTVTNFEITYVWRVDEVTPKTAARDAVEELHEN 84
Query: 71 AGEIDIILAEVDLPVS-KCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEY 129
D++L EV P F +L+Y + +L P+++ S D+ V+KC+ GA +Y
Sbjct: 85 PWSYDMVLTEVHAPAGIDGFNLLQYAGTDMDL---PVVVFSADDDKRTVLKCVNSGACDY 141
Query: 130 LVKPLRMNELLNLWTHVWRRR 150
LVKPLR EL N+W HV+RR+
Sbjct: 142 LVKPLRHEELKNIWQHVYRRK 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,522,479
Number of extensions: 604546
Number of successful extensions: 1338
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 11
Length of query: 518
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 413
Effective length of database: 11,553,331
Effective search space: 4771525703
Effective search space used: 4771525703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)