Os02g0796500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator ARR11 (Receiver-like protein 3).
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Os02g0796500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-component response regulator ARR11 (Receiver-like protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.35 | 0.405 | 10.3 | 2.28 | 0.618 | -1.15 | 0.46 | 0.439 | 0.472 | 21 | 1.17 | 11578 | -- | -- |
| 74.4 | 0.402 | 10.3 | 2.21 | 0.631 | -1.21 | 0.438 | -- | 0.463 | 21.1 | 0.9882 | 11571 | -- | -- |
| 74.99 | 0.403 | 10.3 | 2.27 | 0.618 | -1.15 | -- | 0.457 | 0.472 | 21.1 | 1.17 | 11578 | -- | -- |
| 75.06 | 0.403 | 10.3 | 2.19 | 0.617 | -1.2 | -- | -- | 0.449 | 21.1 | 0.99 | 11571 | -- | -- |
| 95.82 | 0.456 | 10.3 | 2.28 | -- | -1.24 | -- | 0.516 | 0.472 | -- | 1.18 | 11693 | -- | -- |
| 105.19 | 0.481 | 10.4 | 1.79 | 0.64 | -- | 0.398 | -- | 0.164 | 21.1 | -- | -- | -- | -- |
| 105.74 | 0.482 | 10.4 | 1.77 | 0.638 | -- | -- | -- | 0.164 | 21.2 | -- | -- | -- | -- |
| 95.8 | 0.456 | 10.3 | 2.21 | -- | -1.29 | -- | -- | 0.463 | -- | 0.9915 | 11671 | -- | -- |
| 167.64 | 0.603 | 10.4 | -- | 0.791 | -1.05 | -- | -- | 0.344 | 20.9 | 8.5 | 9888 | -- | -- |
| 129.27 | 0.531 | 10.4 | 1.78 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 188.6 | 0.642 | 10.5 | -- | 0.638 | -- | -- | -- | -0.0338 | 21.4 | -- | -- | -- | -- |
| 188.97 | 0.64 | 10.4 | -- | -- | -1.09 | -- | -- | 0.279 | -- | 8.45 | 8874 | -- | -- |
| 212.39 | 0.68 | 10.4 | -- | -- | -- | -- | -- | -0.0365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 2 | 75.39 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 5 | 75.51 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 6 | 75.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 10 | 75.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 15 | 75.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 16 | 75.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 18 | 75.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 19 | 75.62 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 26 | 75.64 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 30 | 75.66 | radiation | 1.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 48 | 75.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 55 | 75.73 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 95 | 75.87 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 96 | 75.87 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 143 | 75.88 | radiation | 1.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 149 | 75.89 | radiation | 1.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 151 | 75.89 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 152 | 75.90 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 155 | 75.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 164 | 75.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 174 | 75.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 230 | 75.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 248 | 75.99 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 305 | 76.08 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 327 | 76.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 352 | 76.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 385 | 76.12 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 412 | 76.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 419 | 76.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 421 | 76.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 568 | 76.35 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 570 | 76.37 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 594 | 76.46 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 613 | 76.48 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 621 | 76.55 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 623 | 76.55 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 649 | 76.62 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 651 | 76.64 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 674 | 76.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 681 | 76.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 685 | 76.73 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 15 | 20 |
| 698 | 76.76 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 721 | 76.79 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 732 | 76.82 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 743 | 76.83 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 752 | 76.87 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 763 | 76.90 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 774 | 76.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 804 | 76.92 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 814 | 76.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 17 |
| 819 | 76.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 823 | 76.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 824 | 76.94 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 20 |
| 829 | 76.95 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 830 | 76.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 16 |
| 836 | 76.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 845 | 76.97 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 846 | 76.97 | wind | 3.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 851 | 76.98 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 855 | 76.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 856 | 76.99 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 857 | 76.99 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 865 | 76.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 22 |
| 870 | 76.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 876 | 77.00 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 883 | 77.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 19 |
| 924 | 77.02 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 930 | 77.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 936 | 77.03 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 939 | 77.03 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 944 | 77.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 952 | 77.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 18 |
| 956 | 77.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 961 | 77.05 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 964 | 77.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 976 | 77.06 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 992 | 77.08 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 997 | 77.09 | wind | 3.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 998 | 77.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 16 |