Os03g0284100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0284100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Two-component response regulator-like PRR73 (Pseudo-response regulator 73) (OsPRR73).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.3	(0.0441)	R²	:	0.919
β₁	:	-2.02	(0.161)	R²_dD	:	0.0304	R²_D	:	0.0327
β₂	:	1.38	(0.122)	R²_dC	:	0.0309	R²_C	:	0.178
β₃	:	-7.1	(0.132)	R²_dE	:	0.695	R²_E	:	0.85
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-2.78	(0.499)	R²_dD*E	:	0.00557	R²_D*E	:	0.00757
γ₁	:	-0.541	(0.094)	R²_dN8	:	0.0078	R²_N8	:	-0.00396
σ	:	0.823
deviance	:	311.99
__

_____

C
peak time of C	:	10.9
E
wheather	:	radiation
threshold	:	0.4957
memory length	:	81
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	0.548
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
310.84	0.828	10.3	-2.03	1.09	-7.11	-1.03	-3.37	-0.55	10.8	0.5612	82	0.924	--
330.22	0.846	10.3	-2.06	1.42	-6.91	0.86	--	-0.537	11.5	0.5144	81	0.628	--
311.99	0.823	10.3	-2.02	1.38	-7.1	--	-2.78	-0.541	10.9	0.4957	81	0.548	--
332.97	0.85	10.3	-2.03	1.33	-7.06	--	--	-0.543	11.1	0.5279	81	0.646	--
340.86	0.86	10.3	-1.89	--	-7.26	--	-2.41	-0.479	--	0.63	79	1.75	--
1050.81	1.52	10.2	-2.09	6.63	--	2.17	--	-0.211	14.1	--	--	--	--
1068.56	1.53	10.2	-2.03	6.63	--	--	--	-0.198	14.1	--	--	--	--
355.17	0.878	10.3	-2.07	--	-7.38	--	--	-0.566	--	0.6259	81	1.77	--
441.82	0.979	10.2	--	1.34	-7.07	--	--	-0.318	11.1	0.6043	79	0.623	--
3706.83	2.84	10.3	-2.3	--	--	--	--	-0.355	--	--	--	--	--
1176.68	1.6	10.1	--	6.67	--	--	--	0.0272	14.1	--	--	--	--
465.06	1	10.3	--	--	-7.42	--	--	-0.36	--	0.6969	81	1.73	--
3846.59	2.89	10.2	--	--	--	--	--	-0.0998	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	331.24	radiation	1.0	90	< th	dose dependent	sin	7	NA
4	374.19	temperature	15.0	90	> th	dose dependent	rect.	23	6
7	389.36	temperature	10.0	270	> th	dose dependent	rect.	21	7
8	390.27	radiation	1.0	90	< th	dose independent	sin	8	NA
10	391.47	radiation	1.0	90	> th	dose independent	sin	8	NA
30	426.61	temperature	20.0	30	> th	dose independent	rect.	24	5
32	429.39	temperature	10.0	90	> th	dose dependent	rect.	11	18
38	435.08	temperature	15.0	270	> th	dose dependent	rect.	24	2
46	445.09	atmosphere	1015.0	90	< th	dose independent	rect.	11	18
49	448.34	atmosphere	1010.0	90	< th	dose independent	rect.	23	6
51	449.43	humidity	70.0	30	> th	dose dependent	rect.	24	5
54	451.80	radiation	1.0	30	< th	dose independent	rect.	24	6
55	452.11	temperature	15.0	90	> th	dose independent	rect.	11	18
67	458.75	radiation	10.0	10	< th	dose dependent	rect.	24	6
70	459.52	wind	9.0	30	< th	dose dependent	rect.	24	5
73	461.23	precipitation	0.1	90	< th	dose independent	rect.	5	6
74	461.23	precipitation	0.1	90	< th	dose dependent	rect.	5	6
75	462.02	temperature	10.0	90	> th	dose independent	rect.	5	6
76	462.02	atmosphere	995.0	90	> th	dose independent	rect.	5	6
77	462.02	atmosphere	1015.0	90	< th	dose independent	rect.	5	6
80	463.34	wind	9.0	90	< th	dose independent	rect.	5	6
81	463.64	humidity	80.0	90	> th	dose independent	rect.	24	5
85	466.12	radiation	40.0	90	< th	dose independent	rect.	5	6
88	468.36	wind	9.0	90	< th	dose independent	rect.	11	18
93	469.62	humidity	50.0	90	> th	dose independent	rect.	5	6
96	470.21	radiation	1.0	90	< th	dose dependent	rect.	24	5
97	470.28	wind	9.0	90	< th	dose dependent	rect.	5	6
106	473.58	temperature	20.0	270	> th	dose independent	rect.	24	2
116	475.00	wind	9.0	90	< th	dose independent	rect.	24	5
118	475.03	temperature	30.0	90	< th	dose independent	rect.	24	5
119	475.03	humidity	50.0	90	> th	dose independent	rect.	24	5
122	475.03	atmosphere	995.0	90	> th	dose independent	rect.	24	5
126	475.03	temperature	10.0	90	> th	dose independent	rect.	5	19
130	476.19	precipitation	0.1	90	< th	dose independent	rect.	24	5
131	476.19	precipitation	0.1	90	< th	dose dependent	rect.	24	5
136	477.49	wind	9.0	90	< th	dose independent	rect.	5	19
148	480.00	wind	3.0	90	< th	dose independent	rect.	24	5
179	483.70	precipitation	0.1	90	< th	dose independent	rect.	11	18
180	483.70	precipitation	0.1	90	< th	dose dependent	rect.	11	18
182	484.32	temperature	30.0	90	< th	dose independent	rect.	5	6
188	485.55	radiation	1.0	90	< th	dose dependent	rect.	24	12
246	499.02	humidity	50.0	90	> th	dose dependent	rect.	5	6
250	499.91	precipitation	0.1	30	< th	dose independent	rect.	5	19
251	499.91	precipitation	0.1	30	< th	dose dependent	rect.	5	19
292	503.95	wind	9.0	270	< th	dose dependent	rect.	24	2
302	506.91	humidity	80.0	270	> th	dose independent	rect.	24	2
307	508.22	atmosphere	995.0	30	> th	dose independent	rect.	5	19
334	514.12	atmosphere	995.0	90	> th	dose independent	rect.	11	18
337	515.16	humidity	50.0	270	> th	dose dependent	rect.	24	2
356	517.02	radiation	1.0	90	> th	dose independent	rect.	4	7
381	518.73	precipitation	0.1	270	< th	dose independent	rect.	24	2
382	518.73	precipitation	0.1	270	< th	dose dependent	rect.	24	2
387	519.55	atmosphere	1010.0	270	< th	dose independent	rect.	24	2
388	519.69	wind	7.0	270	< th	dose independent	rect.	24	2
404	520.23	temperature	10.0	270	> th	dose independent	rect.	3	20
412	520.28	temperature	30.0	270	< th	dose independent	rect.	24	2
413	520.28	humidity	50.0	270	> th	dose independent	rect.	24	2
416	520.28	atmosphere	995.0	270	> th	dose independent	rect.	24	2
417	520.28	radiation	1.0	270	< th	dose independent	rect.	24	2
422	520.28	temperature	10.0	270	> th	dose independent	rect.	2	22
423	520.28	radiation	1.0	270	< th	dose dependent	rect.	24	2
476	526.10	wind	9.0	270	< th	dose independent	rect.	3	20
492	528.47	atmosphere	1015.0	270	< th	dose independent	rect.	9	19
540	532.82	wind	9.0	270	< th	dose independent	rect.	2	22
633	538.11	precipitation	0.1	270	< th	dose independent	rect.	3	20
634	538.11	precipitation	0.1	270	< th	dose dependent	rect.	3	20
645	538.29	temperature	10.0	270	> th	dose independent	rect.	9	19
671	539.80	temperature	10.0	270	> th	dose dependent	rect.	5	2
679	540.91	radiation	20.0	270	< th	dose independent	rect.	5	2
690	542.30	wind	9.0	270	< th	dose dependent	rect.	5	2
692	542.90	humidity	70.0	270	> th	dose independent	rect.	5	2
697	543.27	precipitation	0.1	270	< th	dose independent	rect.	5	2
698	543.27	precipitation	0.1	270	< th	dose dependent	rect.	5	2
705	543.72	wind	5.0	270	< th	dose independent	rect.	5	2
714	544.07	temperature	10.0	270	> th	dose independent	rect.	5	2
716	544.07	temperature	30.0	270	< th	dose independent	rect.	5	2
717	544.07	humidity	50.0	270	> th	dose independent	rect.	5	2
719	544.07	atmosphere	995.0	270	> th	dose independent	rect.	5	2
720	544.07	atmosphere	1015.0	270	< th	dose independent	rect.	5	2
722	544.07	temperature	10.0	270	> th	dose independent	rect.	7	22
723	544.41	wind	9.0	270	< th	dose independent	rect.	9	19
726	544.92	atmosphere	1015.0	30	< th	dose dependent	rect.	24	5
736	546.70	temperature	10.0	90	> th	dose dependent	rect.	5	6
746	548.15	humidity	50.0	30	> th	dose independent	rect.	5	19
747	548.49	radiation	40.0	270	< th	dose dependent	rect.	5	2
754	550.19	atmosphere	995.0	90	> th	dose dependent	rect.	24	5
769	551.41	precipitation	0.1	270	< th	dose independent	rect.	9	19
770	551.41	precipitation	0.1	270	< th	dose dependent	rect.	9	19
772	551.47	humidity	50.0	270	> th	dose dependent	rect.	5	2
774	551.66	wind	9.0	90	< th	dose dependent	rect.	5	8
790	554.80	radiation	40.0	270	< th	dose dependent	rect.	4	5
815	557.78	precipitation	0.1	270	< th	dose independent	rect.	2	22
816	557.78	precipitation	0.1	270	< th	dose dependent	rect.	2	22
862	560.33	wind	9.0	270	< th	dose independent	rect.	7	22
958	566.33	temperature	10.0	90	> th	dose dependent	rect.	5	4