Os06g0183100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator ARR14.
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Os06g0183100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-component response regulator ARR14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.2 | 0.444 | 7.9 | -1.53 | 0.493 | 2.32 | -0.452 | 0.122 | -0.43 | 1.96 | 14.7 | 1072 | -- | -- |
| 89.06 | 0.44 | 7.91 | -1.56 | 0.515 | 2.3 | -0.429 | -- | -0.439 | 1.46 | 13.95 | 1140 | -- | -- |
| 89.78 | 0.441 | 7.91 | -1.55 | 0.515 | 2.26 | -- | -0.0973 | -0.432 | 1.54 | 14.82 | 1128 | -- | -- |
| 89.78 | 0.441 | 7.91 | -1.54 | 0.511 | 2.28 | -- | -- | -0.431 | 1.49 | 14.8 | 1131 | -- | -- |
| 103.5 | 0.474 | 7.91 | -1.61 | -- | 2.55 | -- | -0.0748 | -0.472 | -- | 15.08 | 1051 | -- | -- |
| 171.68 | 0.614 | 7.82 | -0.878 | 0.821 | -- | -0.307 | -- | -0.0403 | 1.16 | -- | -- | -- | -- |
| 172.07 | 0.614 | 7.82 | -0.867 | 0.821 | -- | -- | -- | -0.0386 | 1.14 | -- | -- | -- | -- |
| 103.49 | 0.474 | 7.91 | -1.59 | -- | 2.56 | -- | -- | -0.463 | -- | 14.86 | 1055 | -- | -- |
| 144.44 | 0.56 | 7.85 | -- | 0.571 | 1.63 | -- | -- | -0.17 | 1.34 | 12.29 | 1114 | -- | -- |
| 213.84 | 0.683 | 7.81 | -0.835 | -- | -- | -- | -- | -0.0222 | -- | -- | -- | -- | -- |
| 191.87 | 0.648 | 7.8 | -- | 0.806 | -- | -- | -- | 0.058 | 1.1 | -- | -- | -- | -- |
| 156.67 | 0.583 | 7.85 | -- | -- | 1.49 | -- | -- | -0.178 | -- | 22 | 1077 | -- | -- |
| 232.26 | 0.711 | 7.79 | -- | -- | -- | -- | -- | 0.0705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 61 | 88.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 73 | 88.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 86 | 88.63 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 158 | 89.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 167 | 89.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 309 | 89.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 406 | 90.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 451 | 90.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 511 | 91.15 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 762 | 92.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |