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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0631700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ZmRR2 protein (Response regulator 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0376) R2 : 0.553
β1 : 1.01 (0.139) R2dD : 0.052 R2D : 0.0928
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.9 (0.142) R2dE : 0.449 R2E : 0.503
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0848 (0.0822) R2dN8 : 0.00187 R2N8 : 0.00734
σ : 0.698
deviance : 224.92
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 7.546
memory length : 957
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.43
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.4 0.673 4.31 0.651 1.29 1.95 1.25 -1.51 -0.0255 9.68 20.94 928 6.59 --
206.73 0.67 4.27 1.03 1.3 1.87 1.3 -- 0.0924 9.81 20.55 929 6.93 --
211.08 0.677 4.31 0.655 1.31 1.98 -- -1.67 -0.027 9.75 20.81 944 6.96 --
212.85 0.679 4.27 1.05 1.3 1.86 -- -- 0.0862 9.74 20.59 943 6.96 --
232.82 0.711 4.33 0.719 -- 2.96 -- -1.29 0.0315 -- 1.751 1107 6.83 --
283.51 0.789 4.18 1.46 1.62 -- 1.47 -- 0.468 8.14 -- -- -- --
290.02 0.798 4.18 1.5 1.63 -- -- -- 0.466 8.08 -- -- -- --
224.92 0.698 4.3 1.01 -- 2.9 -- -- 0.0848 -- 7.546 957 5.43 --
237.6 0.718 4.27 -- 1.37 2.38 -- -- -0.0133 10.5 18 990 8.28 --
434.89 0.974 4.22 1.52 -- -- -- -- 0.486 -- -- -- -- --
349.46 0.874 4.21 -- 1.63 -- -- -- 0.299 8.02 -- -- -- --
246.63 0.731 4.35 -- -- 3.27 -- -- -0.102 -- 10.01 964 5.41 --
495.52 1.04 4.26 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.11 temperature 20 720 > th dose dependent rect. 18 14
9 208.93 temperature 20 270 > th dose dependent rect. 2 5
12 210.21 temperature 20 270 > th dose dependent rect. 1 7
22 211.54 temperature 20 720 > th dose dependent sin 11 NA
24 211.64 temperature 20 270 > th dose dependent rect. 3 3
77 217.98 temperature 30 720 < th dose dependent rect. 21 6
78 218.19 temperature 20 270 > th dose independent rect. 3 3
84 218.44 temperature 30 720 < th dose dependent sin 11 NA
93 218.79 temperature 30 720 < th dose dependent rect. 17 15
127 220.16 temperature 20 270 > th dose independent rect. 2 5
150 221.11 temperature 20 1440 > th dose dependent rect. 15 8
197 221.98 temperature 20 1440 > th dose dependent rect. 13 17
226 222.30 temperature 20 1440 > th dose dependent sin 16 NA
306 223.66 temperature 25 1440 < th dose independent rect. 14 10
360 224.31 temperature 25 1440 > th dose independent rect. 13 11
367 224.36 temperature 20 1440 > th dose dependent rect. 21 1
515 225.56 temperature 25 720 < th dose dependent rect. 23 2
541 225.74 temperature 25 1440 < th dose independent sin 17 NA
567 225.88 temperature 20 1440 > th dose dependent rect. 1 23
571 225.91 temperature 20 1440 > th dose dependent no NA NA
580 225.93 temperature 20 1440 > th dose dependent rect. 3 23
630 226.10 temperature 20 1440 > th dose dependent rect. 20 23
688 226.34 temperature 20 270 > th dose independent rect. 2 17
787 226.66 temperature 30 1440 < th dose dependent rect. 15 8
841 226.93 temperature 20 10 > th dose dependent rect. 3 6
852 226.97 temperature 25 1440 > th dose independent sin 17 NA