BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0631700 Os02g0631700|Os02g0631700
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0631700 Similar to ZmRR2 protein (Response regulator 2) 212 7e-56
Os04g0524300 Similar to ZmRR2 protein (Response regulator 2) 194 1e-50
Os07g0449700 189 7e-49
Os04g0673300 Similar to ZmRR2 protein (Response regulator 2) 169 6e-43
Os02g0830200 Similar to ZmRR2 protein (Response regulator 2) 164 3e-41
Os12g0139400 Similar to Type-A response regulator 127 2e-30
Os01g0952500 Similar to Two-component response regulator AR... 127 3e-30
Os11g0143300 Similar to Type-A response regulator 127 3e-30
Os04g0442300 Similar to ZmRR2 protein (Response regulator 2) 114 2e-26
Os02g0557800 CheY-like domain containing protein 106 7e-24
Os08g0358800 Response regulator receiver domain containing ... 91 4e-19
Os08g0377200 89 1e-18
Os09g0532400 CheY-like domain containing protein 70 5e-13
Os07g0695100 CheY-like domain containing protein 66 7e-12
Os03g0284100 Two-component response regulator-like PRR73 (P... 64 3e-11
>Os02g0631700 Similar to ZmRR2 protein (Response regulator 2)
Length = 147
Score = 212 bits (540), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 107/121 (88%)
Query: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMT 86
PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMT
Sbjct: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMT 86
Query: 87 GYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
GY IPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL
Sbjct: 87 GYELLKKVKESSKLKKIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
Query: 147 P 147
P
Sbjct: 147 P 147
>Os04g0524300 Similar to ZmRR2 protein (Response regulator 2)
Length = 134
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/119 (82%), Positives = 103/119 (86%)
Query: 28 PHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 87
PHVLAVDDSSVDRAVI+GILRSS+FRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG
Sbjct: 15 PHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 74
Query: 88 YXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
Y IPVVIMSSENV TRI+RCLEEGAEDFL+KPV+PSDVSRL SRVL
Sbjct: 75 YELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPVQPSDVSRLCSRVL 133
>Os07g0449700
Length = 212
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 102/120 (85%)
Query: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMT 86
PP+V+AVDDSSVDRAVI +LR S++RVTAVDSGKRALE+LGSEPNVSMIITDYWMPEMT
Sbjct: 92 PPYVMAVDDSSVDRAVITALLRRSKYRVTAVDSGKRALEILGSEPNVSMIITDYWMPEMT 151
Query: 87 GYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
GY IPVVIMSSENVPTRISRCLEEGAEDFL+KPVRP+D+SR+ SR+L
Sbjct: 152 GYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRITSRML 211
>Os04g0673300 Similar to ZmRR2 protein (Response regulator 2)
Length = 170
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 94/119 (78%), Gaps = 2/119 (1%)
Query: 29 HVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELL--GSEPNVSMIITDYWMPEMT 86
HVLAVDDSSVDRAVIA ILRSS++RVT V+S RALELL G PNV+MIITDYWMP MT
Sbjct: 51 HVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGMT 110
Query: 87 GYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
GY IPVVIMSSENVP RISRCLEEGAEDFL+KPVRPSDVSRL SR+
Sbjct: 111 GYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>Os02g0830200 Similar to ZmRR2 protein (Response regulator 2)
Length = 131
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 93/119 (78%)
Query: 28 PHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTG 87
PHVLAVDDS VDR VI+ +LRSS++RVT VDSGKRALE+L + NV MIITDY MPEMTG
Sbjct: 11 PHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVHMIITDYCMPEMTG 70
Query: 88 YXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRVL 146
+ IPVV+MSSEN PTRI RCLEEGAEDFL+KPVRPSDVSRL +RV+
Sbjct: 71 FDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVI 129
>Os12g0139400 Similar to Type-A response regulator
Length = 201
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 15/135 (11%)
Query: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLG---------------SEP 71
P HVLAVDDS DR +I +L++S F+VT VDSG +ALE LG E
Sbjct: 8 PFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEV 67
Query: 72 NVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVK 131
V++IITDY MP MTGY IPVVIMSS+N+P+RI+RCLEEGA++F +K
Sbjct: 68 GVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLK 127
Query: 132 PVRPSDVSRLFSRVL 146
PVR SD+S+L +L
Sbjct: 128 PVRLSDMSKLKPHIL 142
>Os01g0952500 Similar to Two-component response regulator ARR9 (Response reactor
4)
Length = 232
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 19/137 (13%)
Query: 29 HVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLG-------------------S 69
HVLAVDDS +DR +I +L++S ++VT VDSG +ALELLG
Sbjct: 11 HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSSPDHQ 70
Query: 70 EPNVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFL 129
E +V++IITDY MP MTGY IPVVIMSSENVP RI+RCLE+GAE+F
Sbjct: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
Query: 130 VKPVRPSDVSRLFSRVL 146
+KPV+ +D+ +L S +L
Sbjct: 131 LKPVKLADMKKLKSHLL 147
>Os11g0143300 Similar to Type-A response regulator
Length = 201
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 15/135 (11%)
Query: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLG---------------SEP 71
P HVLAVDDS DR +I +L++S F+VT VDSG +ALE LG E
Sbjct: 8 PFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEV 67
Query: 72 NVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVK 131
V++IITDY MP MTGY IPVVIMSS+N+P+RI+RCLEEGA++F +K
Sbjct: 68 AVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLK 127
Query: 132 PVRPSDVSRLFSRVL 146
PVR SD+S+L +L
Sbjct: 128 PVRLSDMSKLKPHIL 142
>Os04g0442300 Similar to ZmRR2 protein (Response regulator 2)
Length = 262
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 75/121 (61%), Gaps = 9/121 (7%)
Query: 30 VLAVDDSSVDRAVIAGILRSS----RFRVTAVDSGKRALELLG-----SEPNVSMIITDY 80
VL VDDS VDR V+ +L SS F V AVDS K+A+E LG E + M++TDY
Sbjct: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
Query: 81 WMPEMTGYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSR 140
MPEMTGY IPV++MSSEN P RISRC+ GAEDF+VKP++ DV R
Sbjct: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
Query: 141 L 141
L
Sbjct: 161 L 161
>Os02g0557800 CheY-like domain containing protein
Length = 306
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 33/145 (22%)
Query: 30 VLAVDDSSVDRAVIAGILRSSR-------------FRVTAVDSGKRALELLG-------- 68
VL VDDS VDR V+ +LR+ F VTAVDSGK+A+ELLG
Sbjct: 62 VLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELLGRRRGDRDH 121
Query: 69 ------------SEPNVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSENVPTR 116
++ + +++TDY MPEMTGY IPVV+MSSEN P R
Sbjct: 122 LTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQR 181
Query: 117 ISRCLEEGAEDFLVKPVRPSDVSRL 141
ISRCL GAEDF++KP++ +DV RL
Sbjct: 182 ISRCLTAGAEDFILKPLKMNDVQRL 206
>Os08g0358800 Response regulator receiver domain containing protein
Length = 135
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%)
Query: 53 RVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSEN 112
RVTAV+S +AL L SE +V+MI++DY MPEMTGY +PV+I SS+N
Sbjct: 43 RVTAVESVMQALVFLDSEHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVIIASSDN 102
Query: 113 VPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
+P RI +C + GA+D+++KPV+ +DV R+ + +
Sbjct: 103 IPERIRKCFDGGAKDYILKPVKIADVPRILNYI 135
>Os08g0377200
Length = 167
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%)
Query: 53 RVTAVDSGKRALELLGSEPNVSMIITDYWMPEMTGYXXXXXXXXXXXXXXIPVVIMSSEN 112
RVTAV+S +AL L SE +V+MI++DY MP+MTGY +PVVI SS+N
Sbjct: 75 RVTAVESVMQALMFLDSEHDVNMIVSDYCMPDMTGYDLLMEVKKSPKLAHLPVVIASSDN 134
Query: 113 VPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
+P RI +CL+ GA+D+++KPV+ D+ R+ + +
Sbjct: 135 IPERIRKCLDGGAKDYILKPVKIVDLPRILNYI 167
>Os09g0532400 CheY-like domain containing protein
Length = 623
Score = 70.1 bits (170), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 27 PPHVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEP-NVSMIITDYWMPEM 85
P VL + R +I +LR +RV A G +A ++L + N+ +++T+ +P M
Sbjct: 42 PVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLM 101
Query: 86 TGYXXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
+G+ IPV++MSS + + + +C+ +GA DFLVKP+R +++ L+ V
Sbjct: 102 SGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHV 161
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 30 VLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPN-VSMIITDYWMPEMTGY 88
VL VD R V++ +LR + V ++G++A L N + +++T+ MP ++G
Sbjct: 64 VLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGI 123
Query: 89 XXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
IPV++MSS + + +CL +GA DFLVKP+R +++ L+ V
Sbjct: 124 SLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>Os03g0284100 Two-component response regulator-like PRR73 (Pseudo-response
regulator 73) (OsPRR73)
Length = 767
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 30 VLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELLGSEPN-VSMIITDYWMPEMTGY 88
VL V++ R V++ +LR + V ++G A + L N + +++T+ MP ++G
Sbjct: 83 VLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGI 142
Query: 89 XXXXXXXXXXXXXXIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSRLFSRV 145
IPV++MSS + + +CL +GA DFLVKP+R +++ L+ V
Sbjct: 143 GLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,290,428
Number of extensions: 93842
Number of successful extensions: 240
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 15
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)