Os01g0952500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator ARR9 (Response reactor 4).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0952500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Two-component response regulator ARR9 (Response reactor 4).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.38 | 0.722 | 10.9 | 0.267 | 1.85 | 0.855 | -0.146 | 3.23 | -1.3 | 10.4 | 21.02 | 5375 | -- | -- |
| 245.96 | 0.73 | 10.9 | 0.0968 | 1.83 | 0.9 | -0.299 | -- | -1.4 | 10.3 | 22.22 | 12639 | -- | -- |
| 236.47 | 0.716 | 10.9 | 0.267 | 1.86 | 0.854 | -- | 3.27 | -1.3 | 10.4 | 21.02 | 5376 | -- | -- |
| 245.03 | 0.729 | 10.9 | 0.146 | 1.68 | 0.863 | -- | -- | -1.5 | 10.4 | 30.51 | 18739 | -- | -- |
| 390.35 | 0.925 | 10.9 | -0.244 | -- | 0.962 | -- | 0.196 | -1.25 | -- | 21.02 | 5376 | -- | -- |
| 272.27 | 0.774 | 10.8 | -0.0843 | 1.74 | -- | -0.415 | -- | -1.22 | 10.4 | -- | -- | -- | -- |
| 272.97 | 0.774 | 10.8 | -0.101 | 1.74 | -- | -- | -- | -1.22 | 10.4 | -- | -- | -- | -- |
| 389.82 | 0.924 | 10.9 | -0.227 | -- | 0.976 | -- | -- | -1.25 | -- | 21 | 21844 | -- | -- |
| 243.83 | 0.727 | 10.9 | -- | 1.67 | 0.877 | -- | -- | -1.52 | 10.5 | 30.51 | 18782 | -- | -- |
| 459.22 | 1 | 10.9 | -0.13 | -- | -- | -- | -- | -1.23 | -- | -- | -- | -- | -- |
| 273.24 | 0.773 | 10.8 | -- | 1.74 | -- | -- | -- | -1.21 | 10.5 | -- | -- | -- | -- |
| 391.18 | 0.924 | 10.9 | -- | -- | 0.968 | -- | -- | -1.22 | -- | 21 | 21844 | -- | -- |
| 459.67 | 1 | 10.9 | -- | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 226.02 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 226.52 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 3 | 226.83 | temperature | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 4 | 226.92 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 8 | 226.94 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 10 | 226.95 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 49 | 227.28 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 113 | 227.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 13 |
| 146 | 227.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 147 | 227.82 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 152 | 227.96 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 188 | 228.20 | humidity | 70 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 204 | 228.45 | temperature | 30 | 43200 | > th | dose independent | sin | 8 | NA |
| 205 | 228.45 | temperature | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 211 | 228.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 291 | 228.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 298 | 228.86 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 305 | 228.89 | humidity | 70 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 328 | 228.96 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 363 | 229.07 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 383 | 229.10 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 385 | 229.11 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 574 | 229.24 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 588 | 229.34 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 643 | 229.46 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 650 | 229.49 | humidity | 70 | 43200 | > th | dose dependent | sin | 4 | NA |
| 666 | 229.59 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 674 | 229.62 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 719 | 229.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 756 | 229.85 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 775 | 229.95 | temperature | 30 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 798 | 230.01 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 838 | 230.14 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 852 | 230.15 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 872 | 230.20 | humidity | 70 | 43200 | > th | dose dependent | sin | 16 | NA |
| 893 | 230.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 17 |
| 895 | 230.23 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 899 | 230.24 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 909 | 230.27 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 925 | 230.34 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 934 | 230.38 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 982 | 230.51 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 991 | 230.54 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 998 | 230.57 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 4 |