BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0952500 Os01g0952500|AK101721
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0952500 Similar to Two-component response regulator AR... 309 1e-84
Os12g0139400 Similar to Type-A response regulator 190 7e-49
Os11g0143300 Similar to Type-A response regulator 190 9e-49
Os04g0673300 Similar to ZmRR2 protein (Response regulator 2) 146 1e-35
Os07g0449700 142 2e-34
Os02g0830200 Similar to ZmRR2 protein (Response regulator 2) 141 4e-34
Os04g0524300 Similar to ZmRR2 protein (Response regulator 2) 138 3e-33
Os02g0631700 Similar to ZmRR2 protein (Response regulator 2) 136 1e-32
Os02g0557800 CheY-like domain containing protein 110 6e-25
Os04g0442300 Similar to ZmRR2 protein (Response regulator 2) 110 1e-24
Os08g0377200 97 1e-20
Os08g0358800 Response regulator receiver domain containing ... 95 3e-20
Os07g0695100 CheY-like domain containing protein 72 4e-13
Os11g0157600 Similar to Timing of CAB expression 1 67 1e-11
>Os01g0952500 Similar to Two-component response regulator ARR9 (Response reactor
4)
Length = 232
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 166/232 (71%)
Query: 1 MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXX 60
MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKA
Sbjct: 1 MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSS 60
Query: 61 XXXXXXXXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINR 120
HQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINR
Sbjct: 61 SPSSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINR 120
Query: 121 CLEDGAEEFFLKPVKLADMKKLKSHLLKRKQQLXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
CLEDGAEEFFLKPVKLADMKKLKSHLLKRKQQL
Sbjct: 121 CLEDGAEEFFLKPVKLADMKKLKSHLLKRKQQLPMAAAAPDKPPHKPDEAAASAAAIAEA 180
Query: 181 XXXQTXXXXXXXXXXXXXKRKAAAMEQEVISSPDQRTKPRLSSTSSGLAVET 232
QT KRKAAAMEQEVISSPDQRTKPRLSSTSSGLAVET
Sbjct: 181 ATAQTDGIISDCSCSGSSKRKAAAMEQEVISSPDQRTKPRLSSTSSGLAVET 232
>Os12g0139400 Similar to Type-A response regulator
Length = 201
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 111/147 (75%), Gaps = 4/147 (2%)
Query: 4 VDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXX 63
V E+ FHVLAVDDSL DRKLIE LLK SS+QVTTVDSGSKA
Sbjct: 3 VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQS 62
Query: 64 XXXXXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLE 123
QE+ VNLIITDYCMPGMTGYDLLK++K SS L+DIPVVIMSS+N+P+RINRCLE
Sbjct: 63 DQ----QEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLE 118
Query: 124 DGAEEFFLKPVKLADMKKLKSHLLKRK 150
+GA+EFFLKPV+L+DM KLK H+LK +
Sbjct: 119 EGADEFFLKPVRLSDMSKLKPHILKSR 145
>Os11g0143300 Similar to Type-A response regulator
Length = 201
Score = 190 bits (482), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 111/147 (75%), Gaps = 4/147 (2%)
Query: 4 VDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXX 63
V E+ FHVLAVDDSL DRKLIE LLK SS+QVTTVDSGSKA
Sbjct: 3 VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQS 62
Query: 64 XXXXXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLE 123
QE+ VNLIITDYCMPGMTGYDLLK++K SS L+DIPVVIMSS+N+P+RINRCLE
Sbjct: 63 D----QQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLE 118
Query: 124 DGAEEFFLKPVKLADMKKLKSHLLKRK 150
+GA+EFFLKPV+L+DM KLK H+LK +
Sbjct: 119 EGADEFFLKPVRLSDMSKLKPHILKSR 145
>Os04g0673300 Similar to ZmRR2 protein (Response regulator 2)
Length = 170
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 17/142 (11%)
Query: 5 DAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXX 64
+A+S HVLAVDDS +DR +I +L++S Y+VTTV+S ++A
Sbjct: 45 EAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVP--------- 95
Query: 65 XXXXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLED 124
+VN+IITDY MPGMTGY+LLKRVK SS LK+IPVVIMSSENVP RI+RCLE+
Sbjct: 96 --------NVNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEE 147
Query: 125 GAEEFFLKPVKLADMKKLKSHL 146
GAE+F LKPV+ +D+ +L S +
Sbjct: 148 GAEDFLLKPVRPSDVSRLCSRI 169
>Os07g0449700
Length = 212
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 93/138 (67%), Gaps = 19/138 (13%)
Query: 11 HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXXXXHQ 70
+V+AVDDS +DR +I LL+ S Y+VT VDSG +A
Sbjct: 94 YVMAVDDSSVDRAVITALLRRSKYRVTAVDSGKRALEIL-------------------GS 134
Query: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
E +V++IITDY MP MTGYDLLK++K SS LK IPVVIMSSENVP RI+RCLE+GAE+F
Sbjct: 135 EPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFL 194
Query: 131 LKPVKLADMKKLKSHLLK 148
LKPV+ AD+ ++ S +L+
Sbjct: 195 LKPVRPADISRITSRMLQ 212
>Os02g0830200 Similar to ZmRR2 protein (Response regulator 2)
Length = 131
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 19/141 (13%)
Query: 7 ESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXX 66
E HVLAVDDS++DR +I LL++S Y+VTTVDSG +A
Sbjct: 8 EPEPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSL--------------- 52
Query: 67 XXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGA 126
+ +V++IITDYCMP MTG+DLLKRVK S+ LK+IPVV+MSSEN P RI RCLE+GA
Sbjct: 53 ----DRNVHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGA 108
Query: 127 EEFFLKPVKLADMKKLKSHLL 147
E+F +KPV+ +D+ +L + ++
Sbjct: 109 EDFLIKPVRPSDVSRLCNRVI 129
>Os04g0524300 Similar to ZmRR2 protein (Response regulator 2)
Length = 134
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 19/138 (13%)
Query: 11 HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXXXXHQ 70
HVLAVDDS +DR +I +L++S ++VT VDSG +A
Sbjct: 16 HVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELL-------------------GS 56
Query: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
E +V++IITDY MP MTGY+LLK+VK SS LK+IPVVIMSSENV RINRCLE+GAE+F
Sbjct: 57 EPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFL 116
Query: 131 LKPVKLADMKKLKSHLLK 148
LKPV+ +D+ +L S +L+
Sbjct: 117 LKPVQPSDVSRLCSRVLR 134
>Os02g0631700 Similar to ZmRR2 protein (Response regulator 2)
Length = 147
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 93/137 (67%), Gaps = 19/137 (13%)
Query: 11 HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXXXXHQ 70
HVLAVDDS +DR +I +L++S ++VT VDSG +A
Sbjct: 29 HVLAVDDSSVDRAVIAGILRSSRFRVTAVDSGKRALELL-------------------GS 69
Query: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
E +V++IITDY MP MTGY+LLK+VK SS LK IPVVIMSSENVP RI+RCLE+GAE+F
Sbjct: 70 EPNVSMIITDYWMPEMTGYELLKKVKESSKLKKIPVVIMSSENVPTRISRCLEEGAEDFL 129
Query: 131 LKPVKLADMKKLKSHLL 147
+KPV+ +D+ +L S +L
Sbjct: 130 VKPVRPSDVSRLFSRVL 146
>Os02g0557800 CheY-like domain containing protein
Length = 306
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 18/148 (12%)
Query: 12 VLAVDDSLIDRKLIEMLLKNSS-------------YQVTTVDSGSKAXXXXXXXXX---X 55
VL VDDS +DR+++E+LL+ + VT VDSG KA
Sbjct: 62 VLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELLGRRRGDRDH 121
Query: 56 XXXXXXXXXXXXXHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVP 115
Q ID+ ++TDYCMP MTGYDLLK +K S IPVV+MSSEN P
Sbjct: 122 LTPSSPAAAAAANDQAIDI--VLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEP 179
Query: 116 ARINRCLEDGAEEFFLKPVKLADMKKLK 143
RI+RCL GAE+F LKP+K+ D+++L+
Sbjct: 180 QRISRCLTAGAEDFILKPLKMNDVQRLR 207
>Os04g0442300 Similar to ZmRR2 protein (Response regulator 2)
Length = 262
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 18/137 (13%)
Query: 12 VLAVDDSLIDRKLIEMLLKNS----SYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXXX 67
VL VDDS +DR+++++LL +S S+ V VDS KA
Sbjct: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEG------------ 88
Query: 68 XHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAE 127
+E +++++TDYCMP MTGY+LLK +K S LK IPV++MSSEN P RI+RC+ GAE
Sbjct: 89 --KEQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAE 146
Query: 128 EFFLKPVKLADMKKLKS 144
+F +KP++ D+++L++
Sbjct: 147 DFIVKPLQSKDVQRLRN 163
>Os08g0377200
Length = 167
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%)
Query: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
E DVN+I++DYCMP MTGYDLL VK S L +PVVI SS+N+P RI +CL+ GA+++
Sbjct: 92 EHDVNMIVSDYCMPDMTGYDLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYI 151
Query: 131 LKPVKLADMKKLKSHL 146
LKPVK+ D+ ++ +++
Sbjct: 152 LKPVKIVDLPRILNYI 167
>Os08g0358800 Response regulator receiver domain containing protein
Length = 135
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%)
Query: 71 EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130
E DVN+I++DYCMP MTGYDLL VK S L +PV+I SS+N+P RI +C + GA+++
Sbjct: 60 EHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVIIASSDNIPERIRKCFDGGAKDYI 119
Query: 131 LKPVKLADMKKLKSHL 146
LKPVK+AD+ ++ +++
Sbjct: 120 LKPVKIADVPRILNYI 135
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 18/138 (13%)
Query: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKAXXXXXXXXXXXXXXXXXXXXXXXHQE 71
VL VD R+++ LL++ Y+V ++G +A +
Sbjct: 64 VLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDM------------------Q 105
Query: 72 IDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFL 131
++L++T+ MPG++G LL R+ + K+IPV++MSS + + +CL GA +F +
Sbjct: 106 NSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLV 165
Query: 132 KPVKLADMKKLKSHLLKR 149
KP++ ++K L H+ +R
Sbjct: 166 KPIRKNELKNLWQHVWRR 183
>Os11g0157600 Similar to Timing of CAB expression 1
Length = 623
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 51/76 (67%)
Query: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
+L++T+ MP ++G +LL R+ S K+IPV++MSS++ + RC++ GA +F +KP
Sbjct: 14 FDLVLTEVTMPTLSGIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGAVDFLVKP 73
Query: 134 VKLADMKKLKSHLLKR 149
V+ +++ L H+ +R
Sbjct: 74 VRKNELRNLWQHVWRR 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,627,526
Number of extensions: 124010
Number of successful extensions: 343
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 15
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)