Os04g0673300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZmRR2 protein (Response regulator 2).
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Os04g0673300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZmRR2 protein (Response regulator 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.6 | 0.738 | 10.2 | 0.566 | 1.49 | 0.514 | -1.45 | -6.27 | -0.617 | 8.22 | 980.9 | 10074 | -- | -- |
| 287.94 | 0.79 | 10.4 | -0.109 | 1.52 | 0.675 | -1.19 | -- | -0.72 | 8 | 993.5 | 41113 | -- | -- |
| 253.03 | 0.741 | 10.2 | 0.503 | 1.49 | 0.519 | -- | -6.22 | -0.621 | 8.23 | 985.8 | 10384 | -- | -- |
| 282.42 | 0.783 | 10.4 | -0.0557 | 1.47 | 0.813 | -- | -- | -0.739 | 8.28 | 1017 | 41781 | -- | -- |
| 376.37 | 0.904 | 10.3 | 0.505 | -- | 0.501 | -- | -6.2 | -0.605 | -- | 985.5 | 10548 | -- | -- |
| 293.59 | 0.803 | 10.4 | -0.63 | 1.49 | -- | -1.33 | -- | -0.838 | 8.16 | -- | -- | -- | -- |
| 298.97 | 0.81 | 10.4 | -0.668 | 1.49 | -- | -- | -- | -0.837 | 8.15 | -- | -- | -- | -- |
| 402.39 | 0.934 | 10.4 | -0.0928 | -- | 0.925 | -- | -- | -0.65 | -- | 1017 | 41817 | -- | -- |
| 282.14 | 0.782 | 10.3 | -- | 1.49 | 0.861 | -- | -- | -0.68 | 8.1 | 1017 | 41797 | -- | -- |
| 421.56 | 0.959 | 10.4 | -0.656 | -- | -- | -- | -- | -0.82 | -- | -- | -- | -- | -- |
| 310.74 | 0.825 | 10.4 | -- | 1.49 | -- | -- | -- | -0.763 | 8.18 | -- | -- | -- | -- |
| 402.08 | 0.934 | 10.4 | -- | -- | 1.04 | -- | -- | -0.66 | -- | 1017 | 41816 | -- | -- |
| 432.92 | 0.971 | 10.4 | -- | -- | -- | -- | -- | -0.747 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 244.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 3 | 244.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 5 | 245.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 11 | 246.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 14 | 246.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 48 | 247.39 | humidity | 80 | 43200 | > th | dose independent | sin | 14 | NA |
| 56 | 247.56 | humidity | 80 | 43200 | < th | dose independent | sin | 14 | NA |
| 84 | 248.27 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 93 | 248.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 116 | 248.96 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 128 | 249.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 133 | 249.10 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 137 | 249.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 162 | 249.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 166 | 249.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 191 | 249.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 11 |
| 201 | 249.47 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 202 | 249.47 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 235 | 249.64 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 258 | 249.73 | humidity | 70 | 43200 | > th | dose independent | sin | 17 | NA |
| 276 | 249.79 | humidity | 70 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 329 | 249.96 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 356 | 250.04 | humidity | 70 | 43200 | > th | dose independent | sin | 6 | NA |
| 381 | 250.10 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 405 | 250.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 408 | 250.18 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 412 | 250.18 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 475 | 250.37 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 489 | 250.41 | humidity | 70 | 43200 | < th | dose independent | sin | 6 | NA |
| 513 | 250.49 | humidity | 90 | 43200 | < th | dose dependent | sin | 6 | NA |
| 620 | 250.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 623 | 250.83 | humidity | 80 | 43200 | < th | dose dependent | sin | 13 | NA |
| 628 | 250.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 647 | 250.91 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 661 | 250.95 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 686 | 251.00 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 694 | 251.03 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 732 | 251.12 | humidity | 90 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 753 | 251.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 860 | 251.42 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 965 | 251.66 | humidity | 60 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 997 | 251.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 11 |