Os04g0442300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZmRR2 protein (Response regulator 2).
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Os04g0442300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZmRR2 protein (Response regulator 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 431.58 | 0.976 | 8.86 | -0.266 | 1.09 | 2.34 | 1.84 | 17.9 | -1.63 | 4.27 | 5.375 | 2265 | 10 | -- |
| 483.04 | 1.02 | 8.53 | 0.224 | 1.03 | 2.15 | 3.29 | -- | -1.3 | 3.74 | 1.81 | 20257 | 10.4 | -- |
| 440.69 | 0.978 | 8.88 | -0.26 | 1.09 | 2.43 | -- | 18.6 | -1.65 | 4.22 | 5.468 | 2276 | 10.1 | -- |
| 491.95 | 1.03 | 8.55 | 0.382 | 1.24 | 2.76 | -- | -- | -1.43 | 4.66 | 0.1871 | 20394 | 12.7 | -- |
| 505.56 | 1.05 | 8.89 | -0.143 | -- | 2.75 | -- | 19.4 | -1.61 | -- | 5.32 | 2267 | 10.1 | -- |
| 532.01 | 1.08 | 8.55 | -0.624 | 1.08 | -- | 2.77 | -- | -1.38 | 3.82 | -- | -- | -- | -- |
| 553.84 | 1.1 | 8.56 | -0.663 | 1.11 | -- | -- | -- | -1.39 | 4.24 | -- | -- | -- | -- |
| 505.48 | 1.05 | 8.58 | 0.538 | -- | 3.47 | -- | -- | -1.51 | -- | -11.45 | 19814 | 11 | -- |
| 494.19 | 1.04 | 8.56 | -- | 1.2 | 2.42 | -- | -- | -1.45 | 4.36 | 0.2 | 20326 | 13.2 | -- |
| 620.23 | 1.16 | 8.56 | -0.619 | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
| 565.43 | 1.11 | 8.54 | -- | 1.1 | -- | -- | -- | -1.32 | 4.25 | -- | -- | -- | -- |
| 499.49 | 1.04 | 8.61 | -- | -- | 2.95 | -- | -- | -1.51 | -- | -39.48 | 19997 | 12.6 | -- |
| 630.32 | 1.17 | 8.55 | -- | -- | -- | -- | -- | -1.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 436.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 2 | 436.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 3 | 437.60 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 6 | 438.78 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 9 | 439.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 11 | 439.55 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 14 | 440.22 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 22 | 440.86 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 23 | 440.94 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 25 | 440.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 30 | 441.13 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 32 | 441.29 | humidity | 80.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 33 | 441.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 72 | 442.72 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 94 | 443.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 104 | 443.50 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 127 | 443.91 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 128 | 443.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 160 | 444.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 185 | 444.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 203 | 445.30 | humidity | 80.0 | 43200 | > th | dose independent | no | NA | NA |
| 233 | 445.77 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 242 | 445.92 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 262 | 446.23 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 265 | 446.30 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 280 | 446.52 | humidity | 80.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 300 | 446.82 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 321 | 447.06 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 332 | 447.29 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 392 | 448.19 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 393 | 448.20 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 399 | 448.28 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 420 | 448.51 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 430 | 448.67 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 434 | 448.71 | humidity | 80.0 | 43200 | < th | dose independent | no | NA | NA |
| 448 | 448.82 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 458 | 448.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 459 | 448.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 463 | 448.94 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 468 | 448.98 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 474 | 449.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 483 | 449.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 486 | 449.23 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 539 | 449.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 544 | 449.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 547 | 449.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 548 | 449.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 555 | 449.95 | wind | 7.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 561 | 450.01 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 563 | 450.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 568 | 450.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 570 | 450.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 609 | 450.33 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 657 | 450.83 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 691 | 451.11 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 724 | 451.33 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 795 | 451.77 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 818 | 451.91 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 829 | 452.02 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 830 | 452.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 832 | 452.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 838 | 452.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 909 | 452.43 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 919 | 452.48 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 23 | NA |