BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0442300 Os04g0442300|AK072736
(262 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0442300 Similar to ZmRR2 protein (Response regulator 2) 431 e-121
Os02g0557800 CheY-like domain containing protein 235 3e-62
Os02g0631700 Similar to ZmRR2 protein (Response regulator 2) 131 4e-31
Os04g0524300 Similar to ZmRR2 protein (Response regulator 2) 130 1e-30
Os01g0952500 Similar to Two-component response regulator AR... 127 6e-30
Os07g0449700 127 1e-29
Os02g0830200 Similar to ZmRR2 protein (Response regulator 2) 126 1e-29
Os11g0143300 Similar to Type-A response regulator 121 5e-28
Os04g0673300 Similar to ZmRR2 protein (Response regulator 2) 120 7e-28
Os12g0139400 Similar to Type-A response regulator 119 2e-27
Os08g0358800 Response regulator receiver domain containing ... 89 3e-18
Os08g0377200 89 3e-18
Os07g0695100 CheY-like domain containing protein 69 4e-12
Os03g0284100 Two-component response regulator-like PRR73 (P... 65 6e-11
>Os04g0442300 Similar to ZmRR2 protein (Response regulator 2)
Length = 262
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/224 (94%), Positives = 211/224 (94%)
Query: 39 TRVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLT 98
TRVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLT
Sbjct: 39 TRVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLT 98
Query: 99 DYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDV 158
DYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDV
Sbjct: 99 DYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDV 158
Query: 159 QRLRNCSPANTQCCDAGSDGKPPLLLLPSDHVVVDATXXXXXXXXXXXXXHFAGVAMVLH 218
QRLRNCSPANTQCCDAGSDGKPPLLLLPSDHVVVDAT HFAGVAMVLH
Sbjct: 159 QRLRNCSPANTQCCDAGSDGKPPLLLLPSDHVVVDATAASPPPPPSRRRAHFAGVAMVLH 218
Query: 219 SSSVELSHYFPFLFKFILLVYAILCLGELLHRWSNGCFLNLWCA 262
SSSVELSHYFPFLFKFILLVYAILCLGELLHRWSNGCFLNLWCA
Sbjct: 219 SSSVELSHYFPFLFKFILLVYAILCLGELLHRWSNGCFLNLWCA 262
>Os02g0557800 CheY-like domain containing protein
Length = 306
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/254 (53%), Positives = 160/254 (62%), Gaps = 29/254 (11%)
Query: 35 GRGVTRVLLVDDSPVDRRVVQLLLSS---------SACAGSFHVIAVDSAKKAMEFLGLK 85
G RVL+VDDSPVDRRVV+LLL + + A FHV AVDS KKAME LG +
Sbjct: 56 GAEAVRVLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELLGRR 115
Query: 86 EEGKE---------------QAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSS 130
++ QAID+VLTDYCMPEMTGY+LLKAIKAL PIPV+VMSS
Sbjct: 116 RGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSS 175
Query: 131 ENEPQRISRCMNAGAEDFIVKPLQSKDVQRLRNCSPANT-QCCDAGSDGKPPLLLLPSDH 189
ENEPQRISRC+ AGAEDFI+KPL+ DVQRLR CS A + AG D + +
Sbjct: 176 ENEPQRISRCLTAGAEDFILKPLKMNDVQRLRKCSGATRPKSAVAGDDDR---CCNTAKK 232
Query: 190 VVVDATXXXXXXXXXXXXXHFAGVAMVLHSSSVELSHYFPFLFKFILLVYAILCLGELLH 249
A H AG+AMV+++SS E+SHYF +FK ILL YA+LCL +LLH
Sbjct: 233 AAAAAAATPEQQQQQQRSSHLAGLAMVMNASSFEVSHYFQLIFKLILLAYAVLCLSQLLH 292
Query: 250 RWSNG-CFLNLWCA 262
RWSNG L+LWCA
Sbjct: 293 RWSNGSSLLSLWCA 306
>Os02g0631700 Similar to ZmRR2 protein (Response regulator 2)
Length = 147
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 84/121 (69%), Gaps = 9/121 (7%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
VL VDDS VDR V+ +L SS F V AVDS K+A+E LG E + M++TDY
Sbjct: 30 VLAVDDSSVDRAVIAGILRSS----RFRVTAVDSGKRALELLG-----SEPNVSMIITDY 80
Query: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
MPEMTGYELLK +K S LK IPV++MSSEN P RISRC+ GAEDF+VKP++ DV R
Sbjct: 81 WMPEMTGYELLKKVKESSKLKKIPVVIMSSENVPTRISRCLEEGAEDFLVKPVRPSDVSR 140
Query: 161 L 161
L
Sbjct: 141 L 141
>Os04g0524300 Similar to ZmRR2 protein (Response regulator 2)
Length = 134
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 36 RGVTR-----VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKE 90
RGV R VL VDDS VDR V+ +L SS F V AVDS K+A+E LG E
Sbjct: 7 RGVERGGAPHVLAVDDSSVDRAVISGILRSS----QFRVTAVDSGKRALELLG-----SE 57
Query: 91 QAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIV 150
+ M++TDY MPEMTGYELLK +K S LK IPV++MSSEN RI+RC+ GAEDF++
Sbjct: 58 PNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLL 117
Query: 151 KPLQSKDVQRL 161
KP+Q DV RL
Sbjct: 118 KPVQPSDVSRL 128
>Os01g0952500 Similar to Two-component response regulator ARR9 (Response reactor
4)
Length = 232
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 95/137 (69%), Gaps = 18/137 (13%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEG------------ 88
VL VDDS +DR+++++LL +S S+ V VDS KA+E LGL++EG
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNS----SYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSSP 67
Query: 89 --KEQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAE 146
+E +++++TDYCMP MTGY+LLK +K S LK IPV++MSSEN P RI+RC+ GAE
Sbjct: 68 DHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAE 127
Query: 147 DFIVKPLQSKDVQRLRN 163
+F +KP++ D+++L++
Sbjct: 128 EFFLKPVKLADMKKLKS 144
>Os07g0449700
Length = 212
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
V+ VDDS VDR V+ LL S + V AVDS K+A+E LG E + M++TDY
Sbjct: 95 VMAVDDSSVDRAVITALLRRS----KYRVTAVDSGKRALEILG-----SEPNVSMIITDY 145
Query: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
MPEMTGY+LLK IK S LK IPV++MSSEN P RISRC+ GAEDF++KP++ D+ R
Sbjct: 146 WMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISR 205
Query: 161 L 161
+
Sbjct: 206 I 206
>Os02g0830200 Similar to ZmRR2 protein (Response regulator 2)
Length = 131
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 85/123 (69%), Gaps = 9/123 (7%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
VL VDDS VDR V+ LL SS + V VDS K+A+E L L ++ + M++TDY
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSK----YRVTTVDSGKRALEVLSL-----DRNVHMIITDY 63
Query: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
CMPEMTG++LLK +K + LK IPV++MSSEN P RI RC+ GAEDF++KP++ DV R
Sbjct: 64 CMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSR 123
Query: 161 LRN 163
L N
Sbjct: 124 LCN 126
>Os11g0143300 Similar to Type-A response regulator
Length = 201
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 91/132 (68%), Gaps = 14/132 (10%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKE----------EGKE 90
VL VDDS DR++++ LL +S SF V VDS KA+EFLGL + + +E
Sbjct: 11 VLAVDDSLPDRKLIERLLKTS----SFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQE 66
Query: 91 QAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIV 150
A+++++TDYCMP MTGY+LLK IK S L+ IPV++MSS+N P RI+RC+ GA++F +
Sbjct: 67 VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 126
Query: 151 KPLQSKDVQRLR 162
KP++ D+ +L+
Sbjct: 127 KPVRLSDMSKLK 138
>Os04g0673300 Similar to ZmRR2 protein (Response regulator 2)
Length = 170
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 83/121 (68%), Gaps = 7/121 (5%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDY 100
VL VDDS VDR V+ +L SS + V V+SA +A+E L L G ++M++TDY
Sbjct: 52 VLAVDDSSVDRAVIAKILRSS----KYRVTTVESATRALELLCL---GLVPNVNMIITDY 104
Query: 101 CMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQR 160
MP MTGYELLK +K S LK IPV++MSSEN P RISRC+ GAEDF++KP++ DV R
Sbjct: 105 WMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSR 164
Query: 161 L 161
L
Sbjct: 165 L 165
>Os12g0139400 Similar to Type-A response regulator
Length = 201
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 90/132 (68%), Gaps = 14/132 (10%)
Query: 41 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKE----------EGKE 90
VL VDDS DR++++ LL +S SF V VDS KA+EFLGL + + +E
Sbjct: 11 VLAVDDSLPDRKLIERLLKTS----SFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQE 66
Query: 91 QAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIV 150
+++++TDYCMP MTGY+LLK IK S L+ IPV++MSS+N P RI+RC+ GA++F +
Sbjct: 67 VGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 126
Query: 151 KPLQSKDVQRLR 162
KP++ D+ +L+
Sbjct: 127 KPVRLSDMSKLK 138
>Os08g0358800 Response regulator receiver domain containing protein
Length = 135
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 65/96 (67%), Gaps = 5/96 (5%)
Query: 68 HVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIV 127
V AV+S +A+ FL E ++M+++DYCMPEMTGY+LL +K L +PVI+
Sbjct: 43 RVTAVESVMQALVFLD-----SEHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVII 97
Query: 128 MSSENEPQRISRCMNAGAEDFIVKPLQSKDVQRLRN 163
SS+N P+RI +C + GA+D+I+KP++ DV R+ N
Sbjct: 98 ASSDNIPERIRKCFDGGAKDYILKPVKIADVPRILN 133
>Os08g0377200
Length = 167
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Query: 66 SFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPV 125
S V AV+S +A+ FL E ++M+++DYCMP+MTGY+LL +K L +PV
Sbjct: 73 SIRVTAVESVMQALMFLD-----SEHDVNMIVSDYCMPDMTGYDLLMEVKKSPKLAHLPV 127
Query: 126 IVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQRLRN 163
++ SS+N P+RI +C++ GA+D+I+KP++ D+ R+ N
Sbjct: 128 VIASSDNIPERIRKCLDGGAKDYILKPVKIVDLPRILN 165
>Os07g0695100 CheY-like domain containing protein
Length = 742
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 40 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 99
+VLLVD R+VV LL C + VI ++ ++A +L E + +ID+VLT+
Sbjct: 63 KVLLVDSDDSTRQVVSALLRH--CM--YEVIPAENGQQAWTYL----EDMQNSIDLVLTE 114
Query: 100 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 159
MP ++G LL I + K IPVI+MSS + + +C++ GA DF+VKP++ +++
Sbjct: 115 VVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELK 174
Query: 160 RL 161
L
Sbjct: 175 NL 176
>Os03g0284100 Two-component response regulator-like PRR73 (Pseudo-response
regulator 73) (OsPRR73)
Length = 767
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 40 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 99
RVLLV++ R+VV LL C + VI ++ A + L E + ID+VLT+
Sbjct: 82 RVLLVENDDSTRQVVSALLR--KCC--YEVIPAENGLHAWQCL----EDLQNHIDLVLTE 133
Query: 100 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 159
MP ++G LL I + K IPVI+MSS + + +C++ GA DF+VKP++ +++
Sbjct: 134 VVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELK 193
Query: 160 RL 161
L
Sbjct: 194 NL 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,646,559
Number of extensions: 282665
Number of successful extensions: 657
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 16
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)