Os12g0139400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Type-A response regulator.
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Os12g0139400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Type-A response regulator.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.54 | 0.79 | 12.9 | -0.136 | 1.21 | -0.473 | -0.68 | -5.1 | -0.787 | 8.14 | 994.5 | 4991 | -- | -- |
| 305.27 | 0.814 | 13 | -0.851 | 1.21 | -0.727 | -0.574 | -- | -0.916 | 8.14 | 985.7 | 25860 | -- | -- |
| 283.65 | 0.784 | 12.9 | -0.0109 | 1.21 | -0.501 | -- | -4.99 | -0.76 | 8.17 | 994.9 | 6443 | -- | -- |
| 306.11 | 0.815 | 13 | -0.874 | 1.2 | -0.739 | -- | -- | -0.902 | 8.14 | 986.7 | 25856 | -- | -- |
| 364.58 | 0.889 | 12.9 | -0.00218 | -- | -0.557 | -- | -4.68 | -0.748 | -- | 994.6 | 7089 | -- | -- |
| 317.22 | 0.835 | 13 | -0.616 | 1.21 | -- | -0.564 | -- | -0.925 | 8.11 | -- | -- | -- | -- |
| 318.18 | 0.835 | 13 | -0.632 | 1.21 | -- | -- | -- | -0.925 | 8.12 | -- | -- | -- | -- |
| 385.58 | 0.915 | 13 | -0.839 | -- | -0.713 | -- | -- | -0.869 | -- | 981.4 | 25870 | -- | -- |
| 322.07 | 0.836 | 13 | -- | 1.2 | -0.583 | -- | -- | -0.824 | 8.17 | 994.9 | 17785 | -- | -- |
| 398.33 | 0.933 | 13 | -0.622 | -- | -- | -- | -- | -0.91 | -- | -- | -- | -- | -- |
| 328.71 | 0.848 | 13 | -- | 1.2 | -- | -- | -- | -0.854 | 8.16 | -- | -- | -- | -- |
| 401.86 | 0.934 | 13 | -- | -- | -0.594 | -- | -- | -0.825 | -- | 995 | 17264 | -- | -- |
| 408.53 | 0.943 | 13 | -- | -- | -- | -- | -- | -0.841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 2 | 277.20 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 6 | 277.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 8 | 277.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 9 | 277.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 10 | 277.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 21 | 278.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 22 | 278.11 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 26 | 278.16 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 27 | 278.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 28 | 278.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 45 | 278.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 46 | 278.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 49 | 278.46 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 52 | 278.49 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 63 | 278.66 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 79 | 278.78 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 81 | 278.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 103 | 279.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 130 | 279.32 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 161 | 280.09 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 163 | 280.13 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 168 | 280.14 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 17 |
| 200 | 280.45 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 205 | 280.48 | humidity | 70 | 43200 | > th | dose dependent | sin | 7 | NA |
| 209 | 280.49 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 10 |
| 221 | 280.61 | humidity | 80 | 43200 | > th | dose independent | sin | 4 | NA |
| 224 | 280.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 275 | 281.03 | humidity | 70 | 43200 | > th | dose dependent | sin | 13 | NA |
| 278 | 281.05 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 279 | 281.07 | humidity | 80 | 43200 | < th | dose independent | sin | 4 | NA |
| 363 | 281.71 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 377 | 281.86 | atmosphere | 1000 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 380 | 281.88 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 390 | 281.91 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 441 | 282.21 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 453 | 282.25 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 505 | 282.41 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 515 | 282.41 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 6 | 10 |
| 571 | 282.53 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 606 | 282.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 638 | 282.68 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 668 | 282.76 | atmosphere | 1000 | 4320 | > th | dose dependent | sin | 3 | NA |
| 691 | 282.80 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 708 | 282.82 | radiation | 10 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 772 | 282.92 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 796 | 282.95 | atmosphere | 1015 | 4320 | < th | dose dependent | sin | 2 | NA |
| 806 | 282.96 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 842 | 283.00 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 934 | 283.13 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 12 | 4 |
| 974 | 283.18 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 987 | 283.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |