Os04g0524300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZmRR2 protein (Response regulator 2).
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Os04g0524300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZmRR2 protein (Response regulator 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.98 | 0.29 | 3.24 | 0.172 | 0.194 | 0.238 | -0.253 | 1.16 | -0.0706 | 7.03 | 91 | 5900 | -- | -- |
| 39.71 | 0.293 | 3.24 | 0.0889 | 0.23 | 0.297 | -0.269 | -- | -0.108 | 6.85 | 101.3 | 4780 | -- | -- |
| 38.14 | 0.288 | 3.24 | 0.169 | 0.193 | 0.239 | -- | 1.16 | -0.0711 | 7.22 | 90.93 | 5914 | -- | -- |
| 39.89 | 0.294 | 3.24 | 0.0825 | 0.197 | 0.299 | -- | -- | -0.095 | 7.05 | 95.97 | 4331 | -- | -- |
| 40.09 | 0.295 | 3.25 | 0.171 | -- | 0.241 | -- | 1.15 | -0.0675 | -- | 91 | 5838 | -- | -- |
| 40.86 | 0.3 | 3.22 | 0.0755 | 0.192 | -- | -0.271 | -- | -0.0399 | 6.96 | -- | -- | -- | -- |
| 41.04 | 0.3 | 3.22 | 0.071 | 0.191 | -- | -- | -- | -0.039 | 7.2 | -- | -- | -- | -- |
| 41.83 | 0.301 | 3.24 | 0.0886 | -- | 0.302 | -- | -- | -0.0992 | -- | 116.3 | 4300 | -- | -- |
| 40.08 | 0.295 | 3.24 | -- | 0.197 | 0.298 | -- | -- | -0.112 | 6.96 | 104 | 4425 | -- | -- |
| 42.97 | 0.306 | 3.23 | 0.0744 | -- | -- | -- | -- | -0.0357 | -- | -- | -- | -- | -- |
| 41.17 | 0.3 | 3.23 | -- | 0.192 | -- | -- | -- | -0.0469 | 7.17 | -- | -- | -- | -- |
| 42.04 | 0.302 | 3.24 | -- | -- | 0.295 | -- | -- | -0.107 | -- | 119.7 | 4299 | -- | -- |
| 43.12 | 0.306 | 3.23 | -- | -- | -- | -- | -- | -0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.10 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 2 |
| 3 | 35.15 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 6 | 35.43 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 9 |
| 30 | 36.19 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 52 | 36.79 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 55 | 37.32 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 65 | 37.69 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 66 | 37.70 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 68 | 37.70 | humidity | 80 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 73 | 37.73 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 74 | 37.74 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 75 | 37.74 | humidity | 70 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 84 | 37.75 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 105 | 37.79 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 23 |
| 137 | 37.99 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 1 |
| 143 | 38.02 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 158 | 38.11 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 163 | 38.13 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 166 | 38.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 168 | 38.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 170 | 38.15 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 172 | 38.15 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 195 | 38.16 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 197 | 38.16 | humidity | 70 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 217 | 38.18 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 219 | 38.18 | wind | 5 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 228 | 38.18 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 233 | 38.19 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 244 | 38.20 | humidity | 50 | 4320 | > th | dose dependent | sin | 4 | NA |
| 272 | 38.21 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 277 | 38.21 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 375 | 38.26 | humidity | 70 | 4320 | > th | dose independent | sin | 3 | NA |
| 431 | 38.27 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 432 | 38.27 | humidity | 90 | 4320 | < th | dose dependent | sin | 4 | NA |
| 496 | 38.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 553 | 38.30 | wind | 5 | 10 | < th | dose independent | rect. | 7 | 1 |
| 571 | 38.30 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 675 | 38.33 | humidity | 70 | 4320 | < th | dose independent | sin | 3 | NA |
| 749 | 38.34 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 770 | 38.35 | wind | 1 | 30 | > th | dose independent | rect. | 7 | 1 |
| 829 | 38.36 | humidity | 80 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 918 | 38.39 | radiation | 10 | 10 | > th | dose independent | sin | 11 | NA |
| 938 | 38.39 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |