BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0300600 Os03g0300600|AK066250
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0300600 Similar to Chaperone protein dnaJ 217 3e-57
Os01g0606900 Heat shock protein DnaJ, N-terminal domain con... 94 4e-20
Os05g0562300 Similar to DnaJ-like protein 79 1e-15
Os08g0374400 Similar to DnaJ-like protein 75 3e-14
Os02g0306900 Similar to DnaJ-like protein 74 5e-14
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 73 1e-13
Os01g0977200 Heat shock protein DnaJ, N-terminal domain con... 72 2e-13
Os01g0239100 Heat shock protein DnaJ family protein 67 4e-12
Os01g0101700 Heat shock protein DnaJ, N-terminal domain con... 67 7e-12
Os05g0334400 Heat shock protein DnaJ family protein 66 9e-12
Os02g0804500 Chaperone DnaJ family protein 65 2e-11
Os12g0168400 Similar to GFA2 65 2e-11
Os08g0161900 Similar to DnaJ-like protein 64 6e-11
Os12g0502700 Heat shock protein DnaJ, N-terminal domain con... 63 8e-11
>Os03g0300600 Similar to Chaperone protein dnaJ
Length = 166
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/146 (76%), Positives = 112/146 (76%)
Query: 21 CCYYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGK 80
CCYYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGK
Sbjct: 21 CCYYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGK 80
Query: 81 RAMYDAGLXXXXXXXXXXXXXXMQEMLVMMDNVKNEKPDTLEDLQKMLQDIXXXXXXXXX 140
RAMYDAGL MQEMLVMMDNVKNEKPDTLEDLQKMLQDI
Sbjct: 81 RAMYDAGLFDPLDDDDQDFSDFMQEMLVMMDNVKNEKPDTLEDLQKMLQDIVSGDGGSRG 140
Query: 141 XXXXXXXXXXXTRRTRVAPYPAQSRR 166
TRRTRVAPYPAQSRR
Sbjct: 141 GGVGGRVPSDGTRRTRVAPYPAQSRR 166
>Os01g0606900 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 197
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 8/116 (6%)
Query: 21 CCYYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVS---DPGEANRRFQRIQEAYSVLSD 77
YY++LG+ ASA ++RAAY RLAMKWHPD+ S D EA RFQ++ EAY VLSD
Sbjct: 14 SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD 73
Query: 78 KGKRAMYDAG----LXXXXXXXXXXXXXXMQEMLVMMDNVKNEKPD-TLEDLQKML 128
+ +RA+YD+G L +QEM+ +M V E+P L++L+ ML
Sbjct: 74 EKRRALYDSGMYDPLDDDQEEDVEGFHDFLQEMVSLMATVGREEPVYCLDELRSML 129
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY +LG+ K AS D++ AYR+LAMKWHPD+ ++ EA +F++I EAY VLSD KRA
Sbjct: 5 YYKILGVDKAASDDDLKKAYRKLAMKWHPDKNPNNKKEAENKFKQISEAYEVLSDPQKRA 64
Query: 83 MYD 85
+YD
Sbjct: 65 VYD 67
>Os08g0374400 Similar to DnaJ-like protein
Length = 344
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY +L + ++A+ D+R AYRRLAM+WHPD+ + +A +F+ I EAY+VLSD GKRA
Sbjct: 3 YYEILHVDRSATDDDIRRAYRRLAMRWHPDKNHTGKKDAEAKFKDITEAYNVLSDAGKRA 62
Query: 83 MYD 85
+YD
Sbjct: 63 LYD 65
>Os02g0306900 Similar to DnaJ-like protein
Length = 349
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY LL + + A+ +++ AYR+LAMKWHPD+ + EA +F++I EAY VLSD KRA
Sbjct: 5 YYKLLQVERGATEEELKKAYRKLAMKWHPDKNPNSKKEAEAKFKQISEAYEVLSDSQKRA 64
Query: 83 MYD 85
+YD
Sbjct: 65 VYD 67
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY++L + +NA+ D++ +YRRLA WHPD+ + EA +F++I EAY VLSD KRA
Sbjct: 5 YYNILKVNRNATLEDLKKSYRRLARTWHPDKNPTGGAEAEAKFKQITEAYEVLSDPEKRA 64
Query: 83 MYD 85
+YD
Sbjct: 65 IYD 67
>Os01g0977200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 164
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
+Y +LGI K ASA D++ AY++LA++WHPD+ V + EA F+ I AY VL D+ KR
Sbjct: 58 WYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDKRV 117
Query: 83 MYDAG 87
YD G
Sbjct: 118 RYDRG 122
>Os01g0239100 Heat shock protein DnaJ family protein
Length = 349
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDR-CVSDPGEANRRFQRIQEAYSVLSDKGKR 81
YY +LG+ + A D++ AY +LAM+WHPD+ ++ EA +F++I EAY VLSD KR
Sbjct: 5 YYKVLGVDRGAGDDDLKKAYHKLAMRWHPDKNPTNNKKEAEAKFKQISEAYEVLSDPQKR 64
Query: 82 AMYD 85
+YD
Sbjct: 65 TIYD 68
>Os01g0101700 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 170
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 24 YSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDP---GEANRRFQRIQEAYSVLSDKGK 80
Y LLGI + +VRAAYRR+A K+HPD VS P E RRF +QEAY LSD +
Sbjct: 56 YDLLGISSEGTLDEVRAAYRRMARKYHPD--VSPPDAAAENTRRFIEVQEAYETLSDPSR 113
Query: 81 RAMYDAGL 88
RA YD L
Sbjct: 114 RATYDRAL 121
>Os05g0334400 Heat shock protein DnaJ family protein
Length = 447
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
+YS LG+ +NAS +++++AYR+LA +HPD DPG A ++F+ I AY VLSD KR+
Sbjct: 91 FYSTLGVSRNASKSEIKSAYRKLARSYHPD-VNKDPG-AEQKFKDISNAYEVLSDDEKRS 148
Query: 83 MYD 85
+YD
Sbjct: 149 IYD 151
>Os02g0804500 Chaperone DnaJ family protein
Length = 487
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY+ LG+ ++AS D++AAYR+LA ++HPD +PG A +F+ I AY VLSD+ KRA
Sbjct: 72 YYATLGVPRSASNKDIKAAYRKLARQYHPD-VNKEPG-ATDKFKEISAAYEVLSDEKKRA 129
Query: 83 MYD 85
+YD
Sbjct: 130 LYD 132
>Os12g0168400 Similar to GFA2
Length = 419
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGEANRRFQRIQEAYSVLSDKGKRA 82
YY +LG+ K+ASA+D++ AY LA K+HPD D +A ++FQ +Q AY VL D KR
Sbjct: 70 YYDVLGVNKDASASDIKKAYYLLAKKFHPDTNKED-ADAEKKFQEVQHAYEVLKDDDKRE 128
Query: 83 MYD 85
YD
Sbjct: 129 TYD 131
>Os08g0161900 Similar to DnaJ-like protein
Length = 192
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 7/67 (10%)
Query: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDPGE----ANRRFQRIQEAYSVLSDK 78
YY++L + +NA+ D++ +YRR+AMKWHPD+ +PG+ A +F++I EAY VLSD
Sbjct: 5 YYNVLKVNRNATEEDLKKSYRRMAMKWHPDK---NPGDKKKEAEAKFKKISEAYEVLSDP 61
Query: 79 GKRAMYD 85
KRA+YD
Sbjct: 62 QKRAIYD 68
>Os12g0502700 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 607
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 22 CYYSLLGIRKNASATDVRAAYRRLAMKWHPDR--CVSDPGEANRRFQRIQEAYSVLSDKG 79
CYY +LG+ ++ S D++ A+RRLA+ HPD+ SD A FQ +Q A+SVLSD
Sbjct: 10 CYYEVLGVPRDCSPADIKLAFRRLALSLHPDKQPPGSDVAAATAAFQELQHAHSVLSDPH 69
Query: 80 KRAMYDA 86
+R+ YD+
Sbjct: 70 ERSYYDS 76
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,314,127
Number of extensions: 86293
Number of successful extensions: 325
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 14
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)