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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0101700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0357) R2 : 0.815
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.93 (0.0878) R2dE : 0.815 R2E : 0.815
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0301 (0.0751) R2dN8 : 7.21e-05 R2N8 : -2.7e-05
σ : 0.671
deviance : 207.29
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.9
memory length : 435
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 14.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.72 0.639 12.6 0.67 3.15 1.21 1.28 -0.285 -0.00958 7.62 15.01 67 20 19.5
184.84 0.633 12.6 0.669 3.15 1.23 1.12 -- -0.016 7.62 15.11 62 20 19.5
187.4 0.638 12.6 0.665 3.14 1.22 -- 0.566 -0.0184 7.64 15.58 61 20 19.5
188.09 0.639 12.6 0.695 3.14 1.23 -- -- -0.018 7.63 15.1 63 20 19.5
237.52 0.718 12.6 0.613 -- 3.15 -- 0.901 0.169 -- 14.96 236 22.4 14.3
231.94 0.714 12.5 0.702 4.03 -- 1.28 -- 0.0152 7.35 -- -- -- --
236.37 0.72 12.5 0.73 4.03 -- -- -- 0.0128 7.35 -- -- -- --
198.58 0.656 12.6 0.679 -- 3.93 -- -- 0.0607 -- 14.4 431 20.3 14.7
200.21 0.659 12.6 -- 3.15 1.21 -- -- -0.0941 7.63 15.3 46 20 19.6
1101.87 1.55 12.6 0.797 -- -- -- -- 0.0796 -- -- -- -- --
250.4 0.74 12.6 -- 4.04 -- -- -- -0.0685 7.34 -- -- -- --
207.29 0.671 12.7 -- -- 3.93 -- -- -0.0301 -- 14.9 435 20.2 14.8
1118.63 1.56 12.6 -- -- -- -- -- -0.00888 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.43 temperature 15.0 90 > th dose independent rect. 20 19
2 186.82 radiation 1.0 270 > th dose independent rect. 7 7
5 187.69 temperature 15.0 270 > th dose independent rect. 7 7
7 187.72 humidity 50.0 270 > th dose independent rect. 14 17
10 187.91 humidity 50.0 270 > th dose independent rect. 15 2
11 188.21 radiation 30.0 270 < th dose independent rect. 15 2
13 188.31 humidity 50.0 270 > th dose independent rect. 14 4
15 188.62 precipitation 0.1 270 < th dose independent rect. 17 22
16 188.62 precipitation 0.1 270 < th dose dependent rect. 17 22
18 188.92 radiation 40.0 10 < th dose dependent rect. 14 6
20 189.05 temperature 15.0 270 > th dose independent rect. 17 22
21 189.08 temperature 10.0 270 > th dose dependent rect. 7 7
27 189.44 temperature 10.0 270 > th dose dependent rect. 8 5
31 189.72 radiation 40.0 270 < th dose independent rect. 14 17
32 189.83 wind 9.0 270 < th dose independent rect. 14 17
33 189.89 precipitation 0.1 270 < th dose independent rect. 7 7
34 189.89 precipitation 0.1 270 < th dose dependent rect. 7 7
35 189.93 temperature 15.0 10 > th dose independent rect. 20 20
41 190.19 atmosphere 995.0 270 > th dose independent rect. 7 7
42 190.19 atmosphere 1015.0 270 < th dose independent rect. 7 7
43 190.19 temperature 10.0 270 > th dose independent rect. 14 17
48 190.40 wind 9.0 270 < th dose independent rect. 15 2
49 190.44 wind 9.0 270 < th dose independent rect. 7 7
54 190.65 radiation 40.0 270 < th dose dependent rect. 15 2
55 190.66 humidity 50.0 10 > th dose dependent rect. 16 4
57 190.74 radiation 30.0 90 < th dose independent rect. 15 5
58 190.78 temperature 10.0 270 > th dose independent rect. 15 2
60 190.78 atmosphere 1010.0 270 < th dose independent rect. 15 2
66 190.86 wind 1.0 270 > th dose independent rect. 15 2
68 190.95 temperature 15.0 270 > th dose independent rect. 18 9
73 191.12 precipitation 0.1 90 < th dose independent rect. 20 19
74 191.12 precipitation 0.1 90 < th dose dependent rect. 20 19
76 191.24 temperature 10.0 90 > th dose independent rect. 15 5
78 191.24 atmosphere 1010.0 90 < th dose independent rect. 15 5
83 191.26 wind 9.0 90 < th dose independent rect. 15 5
90 191.33 wind 1.0 90 > th dose independent rect. 15 5
91 191.38 atmosphere 995.0 90 > th dose independent rect. 20 19
92 191.44 wind 9.0 90 < th dose independent rect. 20 19
97 191.53 temperature 10.0 10 > th dose dependent rect. 10 6
98 191.55 wind 1.0 270 > th dose independent rect. 7 7
99 191.61 humidity 50.0 270 > th dose independent rect. 7 7
102 191.71 precipitation 0.1 270 < th dose independent rect. 15 2
103 191.71 precipitation 0.1 270 < th dose dependent rect. 15 2
104 191.86 precipitation 0.1 270 < th dose independent rect. 18 20
105 191.86 precipitation 0.1 270 < th dose dependent rect. 18 20
114 192.24 atmosphere 995.0 90 > th dose independent rect. 15 5
117 192.27 temperature 20.0 10 > th dose independent rect. 10 6
120 192.29 wind 9.0 270 < th dose independent rect. 17 22
125 192.37 wind 9.0 270 < th dose independent rect. 3 15
131 192.45 humidity 70.0 10 > th dose independent rect. 16 4
139 192.51 atmosphere 995.0 270 > th dose independent rect. 18 20
152 192.62 humidity 90.0 270 < th dose independent rect. 9 4
154 192.63 humidity 50.0 270 > th dose independent rect. 18 9
155 192.63 radiation 20.0 270 < th dose independent rect. 18 9
158 192.63 temperature 10.0 270 > th dose independent rect. 3 15
159 192.63 atmosphere 1015.0 270 < th dose independent rect. 3 15
160 192.63 temperature 10.0 90 > th dose dependent rect. 20 19
172 192.70 radiation 40.0 270 < th dose dependent rect. 18 9
175 192.75 atmosphere 995.0 270 > th dose independent rect. 18 9
176 192.77 radiation 20.0 10 < th dose dependent rect. 6 14
177 192.78 wind 9.0 270 < th dose independent rect. 18 9
183 192.91 wind 1.0 270 > th dose independent rect. 13 6
184 192.93 radiation 1.0 10 > th dose independent rect. 10 6
185 192.95 humidity 50.0 270 > th dose independent rect. 19 19
190 192.98 atmosphere 995.0 10 > th dose independent rect. 20 20
191 192.99 atmosphere 995.0 270 > th dose independent rect. 14 17
192 193.01 wind 9.0 270 < th dose independent rect. 18 20
195 193.03 atmosphere 995.0 270 > th dose independent rect. 15 2
200 193.09 humidity 90.0 270 < th dose independent rect. 15 2
202 193.10 temperature 10.0 10 > th dose independent rect. 16 4
204 193.10 atmosphere 1010.0 10 < th dose independent rect. 16 4
224 193.27 wind 1.0 10 > th dose independent rect. 16 4
228 193.33 atmosphere 995.0 10 > th dose independent rect. 16 4
234 193.43 precipitation 0.1 270 < th dose independent rect. 14 17
235 193.43 precipitation 0.1 270 < th dose dependent rect. 14 17
240 193.47 precipitation 0.1 10 < th dose independent rect. 20 20
241 193.47 precipitation 0.1 10 < th dose dependent rect. 20 20
242 193.48 wind 9.0 10 < th dose independent rect. 20 20
250 193.58 atmosphere 995.0 270 > th dose independent rect. 17 22
257 193.63 temperature 10.0 1440 > th dose independent rect. 16 5
260 193.63 temperature 10.0 1440 > th dose independent rect. 21 19
263 193.66 precipitation 0.1 270 < th dose independent rect. 18 9
264 193.66 precipitation 0.1 270 < th dose dependent rect. 18 9
277 193.70 humidity 50.0 10 > th dose independent rect. 16 4
278 193.70 temperature 15.0 270 > th dose independent rect. 9 15
279 193.71 atmosphere 1015.0 270 < th dose independent rect. 14 17
289 193.76 temperature 30.0 30 < th dose independent rect. 16 4
290 193.76 precipitation 0.1 10 < th dose independent rect. 16 4
293 193.76 precipitation 0.1 10 < th dose dependent rect. 16 4
321 193.93 humidity 90.0 90 < th dose independent rect. 9 6
322 193.93 temperature 10.0 10 > th dose dependent rect. 20 20
353 194.10 temperature 30.0 270 < th dose independent rect. 15 2
362 194.18 precipitation 0.1 270 < th dose independent rect. 14 4
363 194.18 precipitation 0.1 270 < th dose dependent rect. 14 4
376 194.34 radiation 30.0 1440 < th dose independent rect. 17 4
420 194.64 humidity 90.0 10 < th dose independent rect. 10 6
426 194.66 atmosphere 995.0 10 > th dose dependent rect. 16 4
474 195.13 radiation 10.0 10 < th dose dependent rect. 10 10
518 195.52 radiation 10.0 30 < th dose independent rect. 6 14
561 195.80 wind 1.0 270 > th dose independent rect. 18 9
563 195.80 temperature 10.0 10 > th dose dependent rect. 8 8
565 195.82 temperature 10.0 10 > th dose independent rect. 10 6
568 195.82 atmosphere 1015.0 10 < th dose independent rect. 10 6
569 195.82 precipitation 0.1 10 < th dose independent rect. 10 6
571 195.82 temperature 10.0 10 > th dose independent rect. 16 18
572 195.82 precipitation 0.1 10 < th dose dependent rect. 10 6
574 195.86 wind 9.0 10 < th dose independent rect. 10 6
577 195.90 atmosphere 995.0 10 > th dose independent rect. 10 6
581 195.93 humidity 90.0 270 < th dose independent rect. 10 2
599 196.07 atmosphere 995.0 10 > th dose independent rect. 16 18
610 196.12 humidity 50.0 10 > th dose independent rect. 16 18
616 196.20 radiation 40.0 90 < th dose dependent rect. 15 18
617 196.25 wind 9.0 10 < th dose independent rect. 16 18
626 196.28 temperature 30.0 270 < th dose independent rect. 19 8
646 196.33 atmosphere 1015.0 10 < th dose independent rect. 16 18
684 196.75 precipitation 0.1 270 < th dose independent rect. 9 14
686 196.75 precipitation 0.1 270 < th dose dependent rect. 9 14
698 196.84 precipitation 0.1 270 < th dose independent rect. 3 15
702 196.84 precipitation 0.1 270 < th dose dependent rect. 3 15
741 197.07 wind 1.0 270 > th dose independent rect. 19 19
744 197.09 humidity 50.0 10 > th dose dependent rect. 16 18
752 197.16 radiation 10.0 10 < th dose dependent rect. 20 11
755 197.19 atmosphere 995.0 270 > th dose dependent rect. 15 2
762 197.21 atmosphere 995.0 270 > th dose independent rect. 3 15
788 197.35 wind 1.0 270 > th dose dependent rect. 15 2
800 197.46 atmosphere 1015.0 270 < th dose dependent rect. 15 2
841 197.60 humidity 90.0 270 < th dose independent rect. 19 19
843 197.61 wind 9.0 270 < th dose dependent rect. 8 6
865 197.72 temperature 10.0 1440 > th dose independent rect. 11 6
869 197.72 temperature 10.0 1440 > th dose independent rect. 17 18
878 197.73 wind 1.0 10 > th dose independent rect. 10 6
956 198.02 temperature 10.0 270 > th dose independent rect. 23 10
957 198.02 humidity 50.0 270 > th dose independent rect. 23 10
958 198.02 atmosphere 995.0 270 > th dose independent rect. 23 10
959 198.02 atmosphere 1015.0 270 < th dose independent rect. 23 10
967 198.04 wind 9.0 270 < th dose independent rect. 23 10
983 198.09 temperature 25.0 30 > th dose dependent rect. 6 1
990 198.11 radiation 1.0 90 < th dose independent rect. 7 12