BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0101700 Os01g0101700|J090038L10
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0101700 Heat shock protein DnaJ, N-terminal domain con... 302 8e-83
Os03g0244950 Similar to Chaperone protein dnaJ 69 2e-12
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 69 2e-12
Os08g0548400 Similar to Chaperone protein dnaJ 68 3e-12
Os12g0168400 Similar to GFA2 66 1e-11
Os03g0300600 Similar to Chaperone protein dnaJ 65 2e-11
Os06g0116800 Similar to GFA2 65 3e-11
Os06g0716100 Similar to Chaperone protein dnaJ 64 5e-11
>Os01g0101700 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 170
Score = 302 bits (774), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 155/170 (91%), Positives = 155/170 (91%)
Query: 1 MPHLXXXXXXXXXXXXXXXRVAFLRPGRVPRPPLQTARGLRPDLGTLRTAEQPTLYDLLG 60
MPHL RVAFLRPGRVPRPPLQTARGLRPDLGTLRTAEQPTLYDLLG
Sbjct: 1 MPHLAASPTSAAAAAPASARVAFLRPGRVPRPPLQTARGLRPDLGTLRTAEQPTLYDLLG 60
Query: 61 ISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRATYDRA 120
ISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRATYDRA
Sbjct: 61 ISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRATYDRA 120
Query: 121 LARGVCRLAFSSSRRVAPYYYQVRFVSSPLLSSDFDLNLSPTFNTSPFSF 170
LARGVCRLAFSSSRRVAPYYYQVRFVSSPLLSSDFDLNLSPTFNTSPFSF
Sbjct: 121 LARGVCRLAFSSSRRVAPYYYQVRFVSSPLLSSDFDLNLSPTFNTSPFSF 170
>Os03g0244950 Similar to Chaperone protein dnaJ
Length = 165
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 54 TLYDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSR 113
+ YD+LG+ + + E++ AYRR+AR HPD SP AAA ++ FI V AY TLSDP +
Sbjct: 65 SFYDVLGLHAGASAREIKDAYRRLARAVHPDASPHPAAA-SSDDFIRVHAAYSTLSDPDK 123
Query: 114 RATYDRAL 121
RA YDR L
Sbjct: 124 RADYDRRL 131
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 56 YDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRA 115
Y++L ++ TL++++ +YRR+AR +HPD +P AE +F ++ EAYE LSDP +RA
Sbjct: 6 YNILKVNRNATLEDLKKSYRRLARTWHPDKNP-TGGAEAEAKFKQITEAYEVLSDPEKRA 64
Query: 116 TYDRALARGV 125
YDR G+
Sbjct: 65 IYDRYGEEGL 74
>Os08g0548400 Similar to Chaperone protein dnaJ
Length = 146
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 10/77 (12%)
Query: 54 TLYDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSR 113
TLYD+LG+ + T+ E++AAYRR+AR+ HPDV AA+ F+ + +AY TLSDP
Sbjct: 44 TLYDVLGLRAGATVREIKAAYRRLARERHPDV----AASAGADDFVRLHDAYATLSDPDS 99
Query: 114 RATYDR------ALARG 124
RA YDR ++ARG
Sbjct: 100 RARYDRDVVAVASMARG 116
>Os12g0168400 Similar to GFA2
Length = 419
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 56 YDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRA 115
YD+LG++ + + +++ AY +A+K+HPD + DA AE ++F EVQ AYE L D +R
Sbjct: 71 YDVLGVNKDASASDIKKAYYLLAKKFHPDTNKEDADAE--KKFQEVQHAYEVLKDDDKRE 128
Query: 116 TYDR 119
TYD+
Sbjct: 129 TYDQ 132
>Os03g0300600 Similar to Chaperone protein dnaJ
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 56 YDLLGISSEGTLDEVRAAYRRMARKYHPD--VSPPDAAAENTRRFIEVQEAYETLSDPSR 113
Y LLGI + +VRAAYRR+A K+HPD VS P E RRF +QEAY LSD +
Sbjct: 24 YSLLGIRKNASATDVRAAYRRLAMKWHPDRCVSDP---GEANRRFQRIQEAYSVLSDKGK 80
Query: 114 RATYD 118
RA YD
Sbjct: 81 RAMYD 85
>Os06g0116800 Similar to GFA2
Length = 442
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 56 YDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSRRA 115
YD+LG+S + E++ AY +A+K HPD + D+ AE R+F EVQ AYETL D +R+
Sbjct: 77 YDVLGVSRNASQGEIKKAYYALAKKLHPDTNKGDSDAE--RKFQEVQRAYETLKDDQKRS 134
Query: 116 TYDR 119
YD+
Sbjct: 135 LYDQ 138
>Os06g0716100 Similar to Chaperone protein dnaJ
Length = 133
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 54 TLYDLLGISSEGTLDEVRAAYRRMARKYHPDVSPPDAAAENTRRFIEVQEAYETLSDPSR 113
T Y++LG+ + + E++AAYRR+AR+ HPD A A FI + AY TL+DP
Sbjct: 44 THYEVLGVGAGASRGEIKAAYRRLAREVHPD-----AGATGDEDFIRLHAAYATLADPDE 98
Query: 114 RATYDRALA 122
RA YDRA+A
Sbjct: 99 RARYDRAMA 107
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,512,586
Number of extensions: 209069
Number of successful extensions: 799
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 11
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)