Os08g0548400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os08g0548400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.65 | 0.4 | 9.25 | 1.18 | 0.954 | 0.608 | -0.722 | 0.333 | 0.403 | 2.33 | 21.6 | 669 | -- | -- |
| 73.06 | 0.398 | 9.26 | 1.14 | 0.966 | 0.576 | -0.621 | -- | 0.394 | 2.27 | 21.6 | 601 | -- | -- |
| 74.48 | 0.402 | 9.25 | 1.21 | 0.972 | 0.597 | -- | 0.332 | 0.406 | 2.27 | 21.6 | 579 | -- | -- |
| 74.82 | 0.403 | 9.26 | 1.13 | 0.967 | 0.591 | -- | -- | 0.388 | 2.29 | 21.54 | 601 | -- | -- |
| 125.18 | 0.521 | 9.27 | 1.35 | -- | 0.697 | -- | 0.36 | 0.38 | -- | 24.5 | 980 | -- | -- |
| 86.64 | 0.436 | 9.22 | 1.3 | 0.976 | -- | -0.721 | -- | 0.555 | 1.92 | -- | -- | -- | -- |
| 88.63 | 0.441 | 9.22 | 1.32 | 0.974 | -- | -- | -- | 0.56 | 1.86 | -- | -- | -- | -- |
| 123.34 | 0.517 | 9.29 | 1.12 | -- | 0.767 | -- | -- | 0.273 | -- | 24.6 | 1016 | -- | -- |
| 86.44 | 0.433 | 9.26 | -- | 1.05 | 1.11 | -- | -- | 0.149 | 2.05 | 18.5 | 47520 | -- | -- |
| 146.06 | 0.565 | 9.21 | 1.36 | -- | -- | -- | -- | 0.582 | -- | -- | -- | -- | -- |
| 134.9 | 0.543 | 9.26 | -- | 0.999 | -- | -- | -- | 0.412 | 1.89 | -- | -- | -- | -- |
| 139.65 | 0.55 | 9.31 | -- | -- | 1.23 | -- | -- | 0.157 | -- | 17.94 | 47520 | -- | -- |
| 195.21 | 0.652 | 9.25 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.09 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 3 |
| 2 | 62.16 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 6 |
| 4 | 62.22 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 13 |
| 6 | 62.31 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 12 | 62.46 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 15 | 62.65 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 3 |
| 21 | 63.38 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 6 |
| 24 | 63.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 9 |
| 25 | 63.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 13 |
| 31 | 63.63 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 2 |
| 32 | 63.66 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 36 | 63.94 | humidity | 60.0 | 90 | > th | dose independent | rect. | 18 | 2 |
| 42 | 64.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 23 |
| 43 | 64.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 44 | 64.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 2 |
| 48 | 64.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 53 | 64.83 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 54 | 64.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 61 | 64.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 67 | 64.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 68 | 64.85 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 69 | 64.90 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 23 |
| 115 | 66.22 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 129 | 66.33 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 1 |
| 130 | 66.33 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 171 | 66.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 174 | 66.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 178 | 66.58 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 180 | 66.58 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 184 | 66.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 204 | 66.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 229 | 66.67 | wind | 1.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 308 | 67.45 | wind | 9.0 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 317 | 67.58 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 359 | 68.42 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 394 | 68.74 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 434 | 69.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 461 | 69.46 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 475 | 69.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 480 | 69.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 15 |
| 530 | 69.80 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 596 | 70.05 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 610 | 70.13 | radiation | 1.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 619 | 70.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 626 | 70.19 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 689 | 70.33 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 19 |
| 691 | 70.34 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 707 | 70.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 709 | 70.43 | radiation | 20.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 715 | 70.45 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 720 | 70.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 838 | 70.96 | humidity | 70.0 | 90 | > th | dose independent | rect. | 1 | 19 |
| 841 | 70.98 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 994 | 71.53 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 23 |