Os06g0116800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GFA2.
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Os06g0116800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GFA2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.99 | 0.373 | 11.6 | -0.1 | 1.07 | -1.02 | -0.163 | -0.703 | 0.0431 | 9.34 | 15.96 | 95 | -- | -- |
| 63.94 | 0.372 | 11.6 | -0.114 | 1.06 | -1.04 | 0.466 | -- | 0.0398 | 9.25 | 14.6 | 101 | -- | -- |
| 62.86 | 0.369 | 11.6 | -0.108 | 1.06 | -1.04 | -- | -0.592 | 0.0346 | 9.23 | 14.48 | 101 | -- | -- |
| 64.65 | 0.374 | 11.6 | -0.0958 | 1.05 | -1.07 | -- | -- | 0.043 | 9.12 | 14.73 | 105 | -- | -- |
| 82.62 | 0.423 | 11.6 | 0.073 | -- | -1.61 | -- | -0.419 | 0.0853 | -- | 11.61 | 8 | -- | -- |
| 80.9 | 0.422 | 11.6 | -0.0787 | 1.93 | -- | 0.643 | -- | 0.107 | 11 | -- | -- | -- | -- |
| 82.66 | 0.426 | 11.6 | -0.0527 | 1.93 | -- | -- | -- | 0.109 | 11 | -- | -- | -- | -- |
| 83.03 | 0.426 | 11.6 | -0.0488 | -- | -1.57 | -- | -- | 0.0959 | -- | 11.38 | 25 | -- | -- |
| 64.89 | 0.375 | 11.6 | -- | 1.04 | -1.07 | -- | -- | 0.0537 | 9.1 | 14.5 | 105 | -- | -- |
| 314.88 | 0.829 | 11.6 | -0.0966 | -- | -- | -- | -- | 0.0945 | -- | -- | -- | -- | -- |
| 82.73 | 0.425 | 11.6 | -- | 1.93 | -- | -- | -- | 0.115 | 11 | -- | -- | -- | -- |
| 82.81 | 0.425 | 11.6 | -- | -- | -1.58 | -- | -- | 0.104 | -- | 12.29 | 16 | -- | -- |
| 315.13 | 0.829 | 11.6 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 6 | 54.20 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 7 | 54.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 17 |
| 11 | 54.41 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 55 | 55.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 68 | 56.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 71 | 56.41 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 139 | 58.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 200 | 59.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 248 | 59.98 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 270 | 60.40 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 15 |
| 272 | 60.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 274 | 60.46 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 17 |
| 286 | 60.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 309 | 60.86 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 344 | 61.27 | radiation | 10 | 90 | < th | dose dependent | sin | 2 | NA |
| 350 | 61.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 359 | 61.43 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 386 | 61.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 422 | 61.77 | temperature | 10 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 430 | 61.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 433 | 61.81 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 437 | 61.83 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 14 |
| 450 | 61.87 | humidity | 70 | 10 | > th | dose dependent | sin | 2 | NA |
| 507 | 62.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 525 | 62.17 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 530 | 62.18 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 545 | 62.23 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 546 | 62.24 | temperature | 25 | 30 | > th | dose independent | sin | 3 | NA |
| 584 | 62.38 | temperature | 25 | 30 | < th | dose independent | sin | 3 | NA |
| 785 | 63.09 | radiation | 10 | 90 | > th | dose independent | sin | 3 | NA |
| 822 | 63.19 | radiation | 10 | 90 | < th | dose dependent | rect. | 2 | 17 |
| 830 | 63.22 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 878 | 63.33 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 907 | 63.41 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 4 |
| 916 | 63.43 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 973 | 63.57 | radiation | 20 | 90 | < th | dose dependent | rect. | 2 | 14 |
| 979 | 63.59 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 7 |
| 992 | 63.62 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |