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Os03g0300600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chaperone protein dnaJ.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0399) R2 : 0.946
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.49 (0.149) R2dC : 0.512 R2C : 0.837
β3 : -2.31 (0.123) R2dE : 0.105 R2E : 0.434
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.126 (0.0914) R2dN8 : 0.000428 R2N8 : 0.00258
σ : 0.734
deviance : 248.58
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_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 25
memory length : 101
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 11.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.19 0.716 10.5 -0.754 6.43 -2.37 1.83 0.599 0.0138 15.6 24.92 97 18.9 11.1
232.38 0.71 10.5 -0.69 6.43 -2.37 1.19 -- 0.0426 15.6 24.99 100 18.8 11.2
235.48 0.715 10.5 -0.646 6.43 -2.37 -- -0.427 0.0563 15.6 24.91 100 18.8 11.2
236.57 0.716 10.5 -0.664 6.42 -2.37 -- -- 0.053 15.6 24.91 101 18.8 11.2
410.71 0.944 10.1 -0.21 -- -7.26 -- 1.13 1.22 -- 93.79 371 19.3 9.93
405.93 0.945 10.3 -0.522 8.54 -- 1.46 -- 0.821 15.3 -- -- -- --
412.82 0.951 10.3 -0.494 8.54 -- -- -- 0.83 15.3 -- -- -- --
368.62 0.894 10.3 -0.473 -- -7.63 -- -- 0.822 -- 86.54 407 18.8 10.1
248.58 0.734 10.5 -- 6.49 -2.31 -- -- 0.126 15.6 25 101 18.8 11.2
4543.78 3.15 10.3 -0.856 -- -- -- -- 0.605 -- -- -- -- --
419.24 0.958 10.3 -- 8.55 -- -- -- 0.885 15.3 -- -- -- --
372.1 0.898 10.3 -- -- -7.62 -- -- 0.97 -- 86.04 407 18.7 10.3
4563.13 3.15 10.3 -- -- -- -- -- 0.7 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.74 temperature 25.0 90 < th dose independent rect. 19 11
4 249.05 temperature 25.0 90 < th dose independent rect. 15 15
6 252.34 temperature 25.0 90 < th dose independent rect. 13 17
11 258.24 temperature 25.0 90 < th dose independent rect. 23 7
15 267.23 temperature 25.0 90 < th dose independent rect. 3 3
28 274.27 radiation 30.0 1440 < th dose independent rect. 4 3
30 275.26 humidity 50.0 90 > th dose dependent rect. 12 18
32 275.56 temperature 25.0 90 < th dose independent rect. 1 5
38 279.05 humidity 50.0 90 > th dose dependent rect. 3 3
41 279.69 precipitation 0.1 90 < th dose independent rect. 6 21
42 279.69 precipitation 0.1 90 < th dose dependent rect. 6 21
44 280.19 radiation 20.0 90 < th dose dependent rect. 3 3
50 280.69 wind 9.0 270 < th dose independent rect. 1 13
51 280.85 wind 9.0 90 < th dose independent rect. 3 3
52 280.85 temperature 10.0 90 > th dose independent rect. 3 3
55 280.85 humidity 50.0 90 > th dose independent rect. 3 3
58 280.85 atmosphere 995.0 90 > th dose independent rect. 3 3
59 280.85 atmosphere 1010.0 90 < th dose independent rect. 3 3
61 280.85 radiation 20.0 90 < th dose independent rect. 3 3
64 280.85 temperature 10.0 90 > th dose independent rect. 6 21
70 281.45 wind 9.0 30 < th dose dependent rect. 3 3
75 282.33 temperature 10.0 270 > th dose independent rect. 14 11
76 282.33 temperature 10.0 270 > th dose independent rect. 1 13
77 282.33 atmosphere 995.0 270 > th dose independent rect. 1 13
78 282.33 atmosphere 1015.0 270 < th dose independent rect. 1 13
82 282.61 precipitation 0.1 90 < th dose independent rect. 3 3
83 282.61 precipitation 0.1 90 < th dose dependent rect. 3 3
89 283.02 wind 9.0 1440 < th dose independent rect. 4 3
90 283.02 temperature 10.0 1440 > th dose independent rect. 4 3
93 283.02 temperature 30.0 1440 < th dose independent rect. 4 3
97 283.02 humidity 50.0 1440 > th dose independent rect. 4 3
102 283.02 atmosphere 995.0 1440 > th dose independent rect. 4 3
103 283.02 atmosphere 1015.0 1440 < th dose independent rect. 4 3
109 283.02 temperature 10.0 1440 > th dose independent rect. 7 21
129 283.91 temperature 15.0 270 > th dose independent rect. 8 22
130 284.00 wind 9.0 90 < th dose independent rect. 6 21
131 284.05 humidity 90.0 90 > th dose independent rect. 3 3
133 284.23 precipitation 0.1 270 < th dose independent rect. 14 11
134 284.23 precipitation 0.1 270 < th dose dependent rect. 14 11
136 284.34 temperature 30.0 270 < th dose dependent rect. 6 2
140 284.44 humidity 50.0 90 > th dose dependent rect. 19 11
142 284.51 temperature 15.0 90 > th dose independent rect. 11 19
146 284.65 atmosphere 1015.0 30 < th dose independent rect. 6 21
154 285.38 humidity 50.0 10 > th dose dependent rect. 12 19
155 285.54 temperature 10.0 90 > th dose dependent rect. 3 3
161 285.95 wind 9.0 270 < th dose independent rect. 14 11
167 286.23 atmosphere 1015.0 90 < th dose dependent rect. 3 3
195 287.17 temperature 10.0 30 > th dose dependent rect. 6 21
197 287.44 wind 1.0 270 > th dose independent rect. 14 11
214 288.97 temperature 25.0 270 < th dose independent rect. 1 2
236 290.72 precipitation 0.1 270 < th dose independent rect. 1 13
237 290.72 precipitation 0.1 270 < th dose dependent rect. 1 13
241 290.98 radiation 40.0 270 < th dose independent rect. 14 11
243 291.40 radiation 10.0 90 < th dose dependent sin 7 NA
257 292.96 temperature 15.0 10 > th dose independent rect. 12 18
260 293.08 humidity 60.0 90 > th dose independent rect. 12 18
263 293.22 temperature 30.0 90 < th dose dependent rect. 6 5
269 293.54 atmosphere 995.0 30 > th dose independent rect. 6 21
296 294.88 wind 9.0 90 < th dose independent rect. 11 19
304 295.37 wind 9.0 270 < th dose independent rect. 8 22
305 295.40 radiation 10.0 90 < th dose dependent rect. 3 11
310 295.51 precipitation 0.1 270 < th dose independent rect. 6 2
311 295.51 precipitation 0.1 270 < th dose dependent rect. 6 2
312 295.52 wind 7.0 270 < th dose independent rect. 6 2
318 295.72 temperature 10.0 270 > th dose independent rect. 6 2
320 295.72 temperature 30.0 270 < th dose independent rect. 6 2
321 295.72 humidity 50.0 270 > th dose independent rect. 6 2
323 295.72 atmosphere 995.0 270 > th dose independent rect. 6 2
324 295.72 atmosphere 1015.0 270 < th dose independent rect. 6 2
341 296.65 precipitation 0.1 90 < th dose independent rect. 6 5
342 296.65 precipitation 0.1 90 < th dose dependent rect. 6 5
345 296.77 temperature 10.0 90 > th dose independent rect. 6 5
346 296.77 atmosphere 995.0 90 > th dose independent rect. 6 5
347 296.77 atmosphere 1015.0 90 < th dose independent rect. 6 5
363 297.25 radiation 40.0 270 < th dose independent rect. 6 2
368 297.34 wind 9.0 90 < th dose independent rect. 6 5
375 297.65 radiation 1.0 90 > th dose independent rect. 6 5
379 297.89 humidity 50.0 90 > th dose independent rect. 6 5
410 298.90 temperature 10.0 270 > th dose dependent rect. 15 10
419 299.51 wind 9.0 270 < th dose dependent rect. 6 2
422 299.73 radiation 1.0 270 > th dose independent rect. 6 2
432 300.12 temperature 25.0 90 < th dose independent sin 11 NA
433 300.17 radiation 1.0 90 < th dose independent rect. 3 10
436 300.28 radiation 1.0 90 < th dose independent rect. 3 12
461 300.90 humidity 60.0 10 > th dose dependent rect. 18 13
463 300.96 wind 9.0 10 < th dose independent rect. 12 18
489 301.89 atmosphere 995.0 90 > th dose independent rect. 11 19
500 302.43 humidity 50.0 270 > th dose independent rect. 10 19
506 302.57 precipitation 0.1 10 < th dose independent rect. 6 6
507 302.57 precipitation 0.1 10 < th dose dependent rect. 6 6
510 302.64 temperature 10.0 10 > th dose independent rect. 6 6
512 302.64 atmosphere 995.0 10 > th dose independent rect. 6 6
513 302.64 atmosphere 1015.0 10 < th dose independent rect. 6 6
520 302.83 humidity 50.0 270 > th dose independent rect. 1 13
562 303.21 atmosphere 995.0 30 > th dose dependent rect. 3 3
564 303.26 temperature 15.0 90 > th dose independent rect. 19 11
568 303.40 radiation 40.0 90 < th dose independent rect. 6 21
573 303.57 temperature 10.0 90 > th dose dependent rect. 17 10
574 303.58 wind 9.0 10 < th dose independent rect. 6 6
584 303.76 temperature 30.0 90 < th dose dependent rect. 3 3
586 303.81 humidity 60.0 10 > th dose dependent rect. 16 15
593 303.98 radiation 1.0 10 > th dose independent rect. 6 6
604 304.37 radiation 1.0 270 < th dose independent sin 10 NA
606 304.42 precipitation 0.1 270 < th dose independent rect. 4 21
607 304.42 precipitation 0.1 270 < th dose dependent rect. 4 21
617 304.79 radiation 1.0 270 > th dose independent sin 10 NA
634 304.83 atmosphere 995.0 10 > th dose independent rect. 12 18
674 306.04 temperature 25.0 270 > th dose independent rect. 16 16
675 306.15 temperature 25.0 270 > th dose independent sin 12 NA
676 306.15 humidity 50.0 270 > th dose independent rect. 9 21
687 306.22 radiation 40.0 720 < th dose dependent rect. 16 14
688 306.25 temperature 10.0 1440 > th dose independent rect. 7 6
691 306.25 atmosphere 995.0 1440 > th dose independent rect. 7 6
692 306.25 temperature 10.0 1440 > th dose independent rect. 13 18
696 306.26 wind 1.0 10 > th dose independent rect. 6 6
714 306.75 wind 9.0 90 < th dose dependent rect. 6 5
723 307.13 temperature 30.0 90 < th dose independent rect. 6 5
749 307.38 temperature 10.0 270 > th dose independent rect. 4 21
750 307.38 radiation 1.0 270 < th dose dependent rect. 1 3
784 307.94 radiation 40.0 90 < th dose dependent rect. 15 12
791 308.06 humidity 50.0 10 > th dose dependent rect. 10 21
793 308.15 humidity 50.0 10 > th dose independent rect. 6 6
797 308.24 wind 1.0 90 > th dose independent rect. 6 21
804 308.49 precipitation 0.1 90 < th dose independent rect. 11 19
805 308.49 precipitation 0.1 90 < th dose dependent rect. 11 19
821 308.77 radiation 1.0 270 > th dose independent rect. 18 15
837 308.99 humidity 70.0 90 > th dose independent rect. 19 11
858 309.50 wind 9.0 90 < th dose dependent rect. 6 21
860 309.58 radiation 10.0 720 < th dose independent rect. 1 5
864 309.61 wind 1.0 90 > th dose independent rect. 6 5
900 310.10 precipitation 0.1 30 < th dose independent rect. 17 10
901 310.10 precipitation 0.1 30 < th dose dependent rect. 17 10
910 310.32 radiation 20.0 10 < th dose dependent sin 7 NA
911 310.36 radiation 1.0 270 < th dose independent rect. 16 13
918 310.51 wind 9.0 270 < th dose independent rect. 4 21
919 310.52 temperature 15.0 10 > th dose independent rect. 10 21
922 310.65 precipitation 0.1 90 < th dose independent rect. 6 13
924 310.65 precipitation 0.1 90 < th dose dependent rect. 6 13
939 310.89 radiation 40.0 90 < th dose independent rect. 6 5
968 311.50 atmosphere 995.0 270 > th dose independent rect. 9 21
974 311.53 humidity 50.0 270 > th dose dependent rect. 6 2
980 311.64 radiation 1.0 270 < th dose dependent rect. 16 13
982 311.67 humidity 90.0 90 < th dose independent rect. 17 17
983 311.68 precipitation 0.1 10 < th dose independent rect. 12 18
984 311.68 precipitation 0.1 10 < th dose dependent rect. 12 18
986 311.76 radiation 40.0 270 < th dose dependent rect. 6 2
995 311.95 radiation 1.0 270 > th dose independent rect. 4 5