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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0606900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.35 (0.0477) R2 : 0.949
β1 : -- (--) R2dD : -- R2D : --
β2 : 11.5 (0.129) R2dC : 0.966 R2C : 0.707
β3 : -6.07 (0.136) R2dE : 0.242 R2E : -0.0166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0885 (0.101) R2dN8 : 0.000113 R2N8 : -0.00251
σ : 0.897
deviance : 370.68
__
_____
C
peak time of C : 16.9
E
wheather : temperature
threshold : 15.09
memory length : 317
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.3
open length of G : 5.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.65 0.894 7.36 -0.596 11.4 -6.06 -0.131 -0.44 0.0133 16.9 14.92 316 16.4 5.25
361.64 0.886 7.36 -0.563 11.4 -6.02 -0.232 -- 0.022 16.9 15 315 16.3 5.32
361.1 0.885 7.36 -0.584 11.4 -6.04 -- -0.355 0.0374 16.9 15 318 16.3 5.28
361.51 0.886 7.36 -0.577 11.5 -6.08 -- -- 0.0255 16.9 15.17 320 16.3 5.32
516.85 1.06 7.08 0.301 -- -9.99 -- -0.569 0.343 -- -10.82 3776 16.7 5.95
805.09 1.33 7.23 -0.632 10.6 -- 0.175 -- 0.0145 15.3 -- -- -- --
805.18 1.33 7.23 -0.628 10.6 -- -- -- 0.0155 15.3 -- -- -- --
489.18 1.03 7.17 -0.548 -- -9.67 -- -- 0.179 -- -9.98 3753 17.2 5.63
370.68 0.897 7.35 -- 11.5 -6.07 -- -- 0.0885 16.9 15.09 317 16.3 5.35
7195.6 3.96 7.25 -1.08 -- -- -- -- -0.264 -- -- -- -- --
815.59 1.34 7.22 -- 10.6 -- -- -- 0.0855 15.3 -- -- -- --
497.82 1.04 7.13 -- -- -9.9 -- -- 0.217 -- 2.7 3763 17 5.73
7226.32 3.97 7.22 -- -- -- -- -- -0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.14 radiation 30.0 270 < th dose dependent rect. 15 7
3 378.31 temperature 15.0 270 > th dose independent rect. 17 5
7 382.64 radiation 1.0 270 < th dose independent rect. 15 6
20 393.60 radiation 20.0 270 < th dose independent rect. 15 7
36 405.07 humidity 50.0 270 > th dose independent rect. 16 6
38 406.00 radiation 1.0 270 < th dose independent rect. 5 16
39 406.04 precipitation 0.1 270 < th dose independent rect. 22 19
40 406.04 precipitation 0.1 270 < th dose dependent rect. 22 19
54 413.98 wind 9.0 270 < th dose independent rect. 17 5
63 415.24 temperature 10.0 270 > th dose independent rect. 22 19
64 415.89 atmosphere 995.0 270 > th dose independent rect. 17 5
70 417.15 atmosphere 1010.0 270 < th dose independent rect. 17 5
79 420.01 wind 9.0 270 < th dose independent rect. 22 19
85 421.20 radiation 1.0 270 < th dose dependent rect. 5 16
94 424.21 temperature 30.0 270 < th dose independent rect. 17 4
97 424.64 wind 1.0 270 > th dose independent rect. 17 5
106 427.63 humidity 50.0 270 > th dose dependent rect. 17 4
122 430.07 temperature 30.0 270 < th dose independent rect. 16 6
127 433.55 temperature 15.0 270 > th dose independent rect. 17 16
140 436.99 temperature 15.0 270 > th dose independent rect. 4 18
146 438.52 radiation 1.0 270 < th dose independent sin 22 NA
151 438.83 wind 9.0 270 < th dose dependent rect. 17 4
152 439.08 radiation 1.0 270 > th dose independent sin 22 NA
154 439.55 precipitation 0.1 270 < th dose independent rect. 17 5
155 439.55 precipitation 0.1 270 < th dose dependent rect. 17 5
160 442.38 atmosphere 1015.0 270 < th dose independent rect. 22 19
163 443.21 atmosphere 995.0 270 > th dose independent rect. 22 18
171 444.99 humidity 50.0 270 > th dose dependent rect. 16 6
187 447.38 wind 9.0 270 < th dose dependent rect. 16 6
228 454.69 precipitation 0.1 270 < th dose independent rect. 12 15
229 454.69 precipitation 0.1 270 < th dose dependent rect. 12 15
245 458.28 radiation 40.0 270 < th dose dependent rect. 17 16
249 459.24 humidity 50.0 270 > th dose independent rect. 17 16
264 461.13 radiation 1.0 270 < th dose dependent sin 22 NA
288 465.60 radiation 1.0 90 < th dose dependent sin 19 NA
290 466.14 temperature 15.0 270 > th dose independent rect. 19 1
307 468.38 precipitation 0.1 270 < th dose independent rect. 9 8
308 468.38 precipitation 0.1 270 < th dose dependent rect. 9 8
310 468.51 temperature 15.0 270 > th dose independent rect. 3 9
314 470.20 radiation 1.0 270 > th dose independent rect. 9 8
316 470.41 wind 9.0 270 < th dose independent rect. 17 16
320 470.67 temperature 30.0 270 < th dose independent rect. 17 16
331 472.63 precipitation 0.1 270 < th dose independent rect. 22 6
332 472.63 precipitation 0.1 270 < th dose dependent rect. 22 6
335 473.11 temperature 10.0 270 > th dose independent rect. 9 8
336 473.11 atmosphere 1015.0 270 < th dose independent rect. 9 8
338 473.24 wind 9.0 270 < th dose independent rect. 3 9
342 473.79 wind 9.0 270 < th dose independent rect. 4 18
344 474.15 temperature 10.0 270 > th dose independent rect. 22 6
345 474.15 temperature 30.0 270 < th dose independent rect. 22 6
346 474.15 humidity 50.0 270 > th dose independent rect. 22 6
349 474.15 atmosphere 995.0 270 > th dose independent rect. 22 6
350 474.15 radiation 1.0 270 < th dose independent rect. 22 6
356 474.15 radiation 1.0 270 < th dose dependent rect. 22 6
362 474.28 wind 9.0 270 < th dose independent rect. 22 6
365 474.74 atmosphere 995.0 270 > th dose independent rect. 17 16
380 476.57 atmosphere 995.0 270 > th dose independent rect. 3 8
381 476.57 atmosphere 1015.0 270 < th dose independent rect. 3 8
382 476.57 temperature 10.0 270 > th dose independent rect. 11 16
390 476.95 atmosphere 1010.0 270 < th dose independent rect. 19 1
403 479.72 radiation 1.0 90 < th dose independent sin 18 NA
404 480.11 wind 9.0 270 < th dose independent rect. 9 8
408 481.09 humidity 50.0 270 > th dose independent rect. 3 8
411 481.64 precipitation 0.1 270 < th dose independent rect. 21 8
412 481.64 precipitation 0.1 270 < th dose dependent rect. 21 8
413 481.66 wind 7.0 270 < th dose independent rect. 19 1
424 482.77 wind 9.0 270 < th dose independent rect. 12 15
425 482.83 radiation 1.0 270 < th dose dependent rect. 21 8
432 483.10 precipitation 0.1 270 < th dose independent rect. 3 8
433 483.10 precipitation 0.1 270 < th dose dependent rect. 3 8
438 483.75 radiation 1.0 90 > th dose independent sin 18 NA
442 483.92 atmosphere 1015.0 270 < th dose independent rect. 4 18
443 483.95 atmosphere 995.0 270 > th dose independent rect. 4 18
448 484.11 radiation 1.0 270 < th dose independent rect. 21 8
451 484.13 temperature 10.0 270 > th dose independent rect. 21 8
452 484.13 temperature 30.0 270 < th dose independent rect. 21 8
453 484.13 humidity 50.0 270 > th dose independent rect. 21 8
456 484.13 atmosphere 995.0 270 > th dose independent rect. 21 8
461 484.23 radiation 30.0 270 < th dose independent rect. 17 16
463 484.51 temperature 30.0 270 < th dose independent rect. 3 19
465 484.78 humidity 50.0 270 > th dose independent rect. 4 17
473 485.46 temperature 10.0 270 > th dose dependent rect. 9 8
475 485.65 wind 9.0 270 < th dose independent rect. 21 8
476 485.65 wind 9.0 270 < th dose independent rect. 5 16
509 488.16 humidity 50.0 270 > th dose independent rect. 3 19
510 488.21 atmosphere 1015.0 270 < th dose independent rect. 5 16
512 488.46 wind 1.0 270 > th dose independent rect. 19 1
519 488.69 atmosphere 995.0 270 > th dose independent rect. 19 1
526 488.69 temperature 10.0 270 > th dose independent rect. 20 23
539 489.28 humidity 50.0 270 > th dose independent rect. 22 18
547 490.43 temperature 30.0 270 < th dose independent rect. 4 17
554 491.09 wind 1.0 270 > th dose independent rect. 9 8
619 494.03 temperature 10.0 270 > th dose dependent rect. 18 3
742 498.83 atmosphere 1015.0 270 < th dose independent rect. 22 6
770 500.37 atmosphere 995.0 270 > th dose independent rect. 5 16
782 501.50 temperature 15.0 10 > th dose independent rect. 19 5
822 503.61 radiation 1.0 270 < th dose dependent rect. 21 16
826 503.94 radiation 1.0 270 < th dose dependent rect. 21 12
829 504.03 temperature 10.0 270 > th dose dependent rect. 17 5
848 504.86 wind 1.0 270 > th dose independent rect. 22 6
849 504.90 humidity 50.0 270 > th dose dependent rect. 22 5
878 505.82 precipitation 0.1 270 < th dose independent rect. 4 18
879 505.82 precipitation 0.1 270 < th dose dependent rect. 4 18
903 507.53 humidity 50.0 270 > th dose dependent rect. 4 18
916 509.39 atmosphere 1010.0 10 < th dose independent rect. 19 5
942 510.58 precipitation 0.1 270 < th dose independent rect. 17 16
943 510.58 precipitation 0.1 270 < th dose dependent rect. 17 16
952 511.56 atmosphere 1015.0 270 < th dose dependent rect. 18 3
958 512.25 wind 1.0 270 > th dose independent rect. 4 18
976 513.26 temperature 30.0 270 < th dose independent rect. 3 8