BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0606900 Os01g0606900|AK065697
(197 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0606900 Heat shock protein DnaJ, N-terminal domain con... 377 e-105
Os03g0300600 Similar to Chaperone protein dnaJ 92 2e-19
Os01g0239100 Heat shock protein DnaJ family protein 77 5e-15
Os05g0562300 Similar to DnaJ-like protein 77 1e-14
Os02g0306900 Similar to DnaJ-like protein 76 2e-14
Os08g0374400 Similar to DnaJ-like protein 72 3e-13
Os01g0977200 Heat shock protein DnaJ, N-terminal domain con... 71 5e-13
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 70 1e-12
Os02g0195800 Similar to Chaperone protein dnaJ 6 (AtJ6) (At... 69 1e-12
Os02g0760000 Heat shock protein DnaJ family protein 66 2e-11
Os02g0804500 Chaperone DnaJ family protein 66 2e-11
>Os01g0606900 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 197
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 14 SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD 73
SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD
Sbjct: 14 SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD 73
Query: 74 EKRRALYDSGMYDPLDDDQEEDVEGFHDFLQEMVSLMATVGREEPVYCLDELRSMLDGMM 133
EKRRALYDSGMYDPLDDDQEEDVEGFHDFLQEMVSLMATVGREEPVYCLDELRSMLDGMM
Sbjct: 74 EKRRALYDSGMYDPLDDDQEEDVEGFHDFLQEMVSLMATVGREEPVYCLDELRSMLDGMM 133
Query: 134 QDFASSELPSPSGGFFAGAPSSPFADTGAAQQQRGVGSASARAHAHPQVVGNSACLSRMA 193
QDFASSELPSPSGGFFAGAPSSPFADTGAAQQQRGVGSASARAHAHPQVVGNSACLSRMA
Sbjct: 134 QDFASSELPSPSGGFFAGAPSSPFADTGAAQQQRGVGSASARAHAHPQVVGNSACLSRMA 193
Query: 194 FSSY 197
FSSY
Sbjct: 194 FSSY 197
>Os03g0300600 Similar to Chaperone protein dnaJ
Length = 166
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 8/114 (7%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY++LG+ ASA ++RAAY RLAMKWHPD+ S D EA RFQ++ EAY VLSD+
Sbjct: 23 YYSLLGIRKNASATDVRAAYRRLAMKWHPDRCVS---DPGEANRRFQRIQEAYSVLSDKG 79
Query: 76 RRALYDSGMYDPLDDDQEEDVEGFHDFLQEMVSLMATVGREEPVYCLDELRSML 129
+RA+YD+G++ D ++D + F DF+QEM+ +M V E+P L++L+ ML
Sbjct: 80 KRAMYDAGLF----DPLDDDDQDFSDFMQEMLVMMDNVKNEKPD-TLEDLQKML 128
>Os01g0239100 Heat shock protein DnaJ family protein
Length = 349
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY VLGV GA +++ AYH+LAM+WHPDK + + +EA+++F+Q+ EAY+VLSD +
Sbjct: 5 YYKVLGVDRGAGDDDLKKAYHKLAMRWHPDKNPTN--NKKEAEAKFKQISEAYEVLSDPQ 62
Query: 76 RRALYD 81
+R +YD
Sbjct: 63 KRTIYD 68
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY +LGV AS +++ AY +LAMKWHPDK + + +EA+++F+Q+ EAY+VLSD +
Sbjct: 5 YYKILGVDKAASDDDLKKAYRKLAMKWHPDKNPNNK---KEAENKFKQISEAYEVLSDPQ 61
Query: 76 RRALYD 81
+RA+YD
Sbjct: 62 KRAVYD 67
>Os02g0306900 Similar to DnaJ-like protein
Length = 349
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY +L V GA+ E++ AY +LAMKWHPDK + + +EA+++F+Q+ EAY+VLSD +
Sbjct: 5 YYKLLQVERGATEEELKKAYRKLAMKWHPDKNPNSK---KEAEAKFKQISEAYEVLSDSQ 61
Query: 76 RRALYD 81
+RA+YD
Sbjct: 62 KRAVYD 67
>Os08g0374400 Similar to DnaJ-like protein
Length = 344
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY +L V A+ +IR AY RLAM+WHPDK +G+ DAE ++F+ + EAY VLSD
Sbjct: 3 YYEILHVDRSATDDDIRRAYRRLAMRWHPDKNHTGKKDAE---AKFKDITEAYNVLSDAG 59
Query: 76 RRALYD 81
+RALYD
Sbjct: 60 KRALYD 65
>Os01g0977200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 164
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 14 SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD 73
+Y +LG+ ASAA+I+ AY +LA++WHPDK R EEA++ F+++ AY+VL D
Sbjct: 56 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNR---EEAENMFREIAAAYEVLGD 112
Query: 74 EKRRALYDSG 83
E +R YD G
Sbjct: 113 EDKRVRYDRG 122
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY +L V+ A+ +++ +Y RLA WHPDK +G EA+++F+Q+ EAY+VLSD +
Sbjct: 5 YYNILKVNRNATLEDLKKSYRRLARTWHPDKNPTG---GAEAEAKFKQITEAYEVLSDPE 61
Query: 76 RRALYD 81
+RA+YD
Sbjct: 62 KRAIYD 67
>Os02g0195800 Similar to Chaperone protein dnaJ 6 (AtJ6) (AtDjC6)
Length = 282
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 14 SSYYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSD 73
S Y +LGV AS EI+ AYH+LA++ HPDK EEAK +FQQ+ + +L D
Sbjct: 29 KSLYEILGVERTASQQEIKKAYHKLALRLHPDKNPGD----EEAKEKFQQLQKVISILGD 84
Query: 74 EKRRALYD-SGMYD 86
E++RALYD +G+ D
Sbjct: 85 EEKRALYDETGIAD 98
>Os02g0760000 Heat shock protein DnaJ family protein
Length = 163
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEEAKSRFQQVHEAYQVLSDEK 75
YY +L V AS IR++Y RLA+KWHPDK + E A SRFQ+++EAYQVLS+
Sbjct: 35 YYKILEVGYDASEEAIRSSYIRLALKWHPDK----KQGEENATSRFQEINEAYQVLSNPA 90
Query: 76 RRALYDS 82
+R YD
Sbjct: 91 KRREYDK 97
>Os02g0804500 Chaperone DnaJ family protein
Length = 487
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 7/67 (10%)
Query: 16 YYAVLGVHPGASAAEIRAAYHRLAMKWHPDKITSGRVDAEE-AKSRFQQVHEAYQVLSDE 74
YYA LGV AS +I+AAY +LA ++HPD V+ E A +F+++ AY+VLSDE
Sbjct: 72 YYATLGVPRSASNKDIKAAYRKLARQYHPD------VNKEPGATDKFKEISAAYEVLSDE 125
Query: 75 KRRALYD 81
K+RALYD
Sbjct: 126 KKRALYD 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,726,370
Number of extensions: 300555
Number of successful extensions: 1457
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 12
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)