Os02g0760000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os02g0760000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.87 | 0.618 | 10.3 | -1.79 | 2.69 | -2.3 | 2.64 | 0.661 | -0.788 | 9.32 | 6.683 | 93 | -- | -- |
| 173.94 | 0.614 | 10.3 | -1.78 | 2.66 | -2.37 | 2.08 | -- | -0.78 | 9.19 | 6.83 | 95 | -- | -- |
| 183.48 | 0.631 | 10.3 | -1.73 | 2.71 | -2.34 | -- | -0.88 | -0.797 | 9.19 | 7.016 | 99 | -- | -- |
| 187.89 | 0.638 | 10.3 | -1.71 | 2.73 | -2.28 | -- | -- | -0.766 | 9.31 | 7.067 | 99 | -- | -- |
| 326.84 | 0.847 | 10.3 | -1.7 | -- | -3.71 | -- | -0.846 | -0.745 | -- | 7.016 | 99 | -- | -- |
| 244.11 | 0.732 | 10.2 | -1.74 | 4.85 | -- | 1.48 | -- | -0.641 | 10.9 | -- | -- | -- | -- |
| 253.31 | 0.745 | 10.2 | -1.68 | 4.85 | -- | -- | -- | -0.636 | 10.9 | -- | -- | -- | -- |
| 331.25 | 0.851 | 10.3 | -1.69 | -- | -3.71 | -- | -- | -0.744 | -- | 7.016 | 99 | -- | -- |
| 263.24 | 0.756 | 10.3 | -- | 2.91 | -2.01 | -- | -- | -0.628 | 9.76 | 8.344 | 81 | -- | -- |
| 1712.03 | 1.93 | 10.3 | -1.79 | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
| 327.86 | 0.847 | 10.2 | -- | 4.86 | -- | -- | -- | -0.448 | 11 | -- | -- | -- | -- |
| 401.6 | 0.933 | 10.2 | -- | -- | -3.73 | -- | -- | -0.425 | -- | 8.584 | 8 | -- | -- |
| 1796.34 | 1.98 | 10.3 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.39 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 2 | 166.07 | radiation | 1.0 | 90 | < th | dose independent | sin | 23 | NA |
| 5 | 169.96 | radiation | 1.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 7 | 170.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 9 | 172.49 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 17 | 175.93 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 19 | 176.06 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 21 | 176.17 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 11 |
| 24 | 176.38 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 30 | 176.76 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 176.94 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 38 | 177.56 | radiation | 10.0 | 90 | < th | dose dependent | no | NA | NA |
| 44 | 178.16 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 85 | 181.69 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 98 | 182.79 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 100 | 182.98 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 101 | 183.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 12 |
| 117 | 183.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 12 |
| 120 | 183.57 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 9 |
| 174 | 185.69 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 263 | 187.81 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 16 | 5 |
| 292 | 188.34 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 339 | 189.14 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 360 | 189.31 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 423 | 190.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 505 | 191.23 | temperature | 30.0 | 90 | < th | dose independent | rect. | 16 | 5 |
| 514 | 191.43 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 549 | 191.72 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 621 | 191.85 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 622 | 191.85 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 630 | 191.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 646 | 191.94 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 916 | 194.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 20 |
| 917 | 194.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 20 |
| 963 | 195.01 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 964 | 195.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 977 | 195.15 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 19 |