BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0203800 Os03g0203800|AK070370
(345 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0203800 Cyclin-like domain containing protein 582 e-166
Os03g0617500 Cyclin-like domain containing protein 129 3e-30
Os12g0588800 Cyclin-like domain containing protein 121 7e-28
Os03g0392000 111 7e-25
Os06g0236600 Similar to Cyclin delta-1 108 4e-24
Os08g0479300 Cyclin-like domain containing protein 105 5e-23
Os07g0620800 Cyclin-like domain containing protein 100 3e-21
Os09g0466100 Cyclin-like domain containing protein 98 1e-20
Os06g0217900 Cyclin-like domain containing protein 72 4e-13
Os09g0382300 Similar to Cyclin D3.1 protein 71 1e-12
Os01g0233500 Cyclin 71 1e-12
Os03g0208800 70 2e-12
Os03g0607600 Similar to Cyclin 69 5e-12
Os04g0563700 Cyclin 69 8e-12
Os12g0581800 Cyclin-like domain containing protein 68 1e-11
Os12g0502300 Similar to Cyclin A-like protein (Fragment) 67 2e-11
Os06g0726800 G2/mitotic-specific cyclin 2 (B-like cyclin) (... 66 5e-11
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/345 (83%), Positives = 289/345 (83%)
Query: 1 MGDXXXXXXXXXXXXXXLICREDGNDLFSADPAXXXXXXXXXXXWELSIAXXXXXXXXXX 60
MGD LICREDGNDLFSADPA WELSIA
Sbjct: 1 MGDASASTSAPATPTSTLICREDGNDLFSADPADDDGGGGSGGDWELSIADDDHVLLMDR 60
Query: 61 XXEYLALMLSKERCAXXXXXXXXXXXXXXXXXXXWMKNARAWCVGWIVKTNAGFRFSLKT 120
EYLALMLSKERCA WMKNARAWCVGWIVKTNAGFRFSLKT
Sbjct: 61 DDEYLALMLSKERCAGGGGGGERGDEEEEEMVEEWMKNARAWCVGWIVKTNAGFRFSLKT 120
Query: 121 AYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLDMYDCASL 180
AYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLDMYDCASL
Sbjct: 121 AYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLDMYDCASL 180
Query: 181 MRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDERKAIVLRAIECIFASIKVISSVGYQ 240
MRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDERKAIVLRAIECIFASIKVISSVGYQ
Sbjct: 181 MRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDERKAIVLRAIECIFASIKVISSVGYQ 240
Query: 241 PSTIALAAILIARNKETAPNLDELKSVVGSLWQQLDTGHVYSCYNKMMIQEDRSMQSTTE 300
PSTIALAAILIARNKETAPNLDELKSVVGSLWQQLDTGHVYSCYNKMMIQEDRSMQSTTE
Sbjct: 241 PSTIALAAILIARNKETAPNLDELKSVVGSLWQQLDTGHVYSCYNKMMIQEDRSMQSTTE 300
Query: 301 VASSGVSVAHIGGSEDSAMGGANNATTLEATPDKKRKRLHSPQRQ 345
VASSGVSVAHIGGSEDSAMGGANNATTLEATPDKKRKRLHSPQRQ
Sbjct: 301 VASSGVSVAHIGGSEDSAMGGANNATTLEATPDKKRKRLHSPQRQ 345
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 115/204 (56%), Gaps = 8/204 (3%)
Query: 95 WMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRD-KEWALQLLSVACL 153
W AR V WI++T F F +TAY+A+ Y DRF RRC+DR WA +LL+VAC+
Sbjct: 43 WFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACV 102
Query: 154 SLAAKVEERRPPRLPEFKLDMYD------CASLMRMELLVLTTLKWQMITETPFSYLNCF 207
SLAAK+EE R P L EF+ + D C + RMELLVL+TL W+M TPF YL C
Sbjct: 103 SLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCL 162
Query: 208 TAKF-RHDERKAIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETAPNLDELKS 266
+++ RH + IF++ + S + ++PST+A AA+L A + E K
Sbjct: 163 SSRLRRHVGGGGGAGASAALIFSAAEAASVLDHRPSTVAAAAVLAATHGALTREALESKM 222
Query: 267 VVGSLWQQLDTGHVYSCYNKMMIQ 290
S LD V++CY+ M+ Q
Sbjct: 223 SGLSPSFLLDKEDVFACYSAMLSQ 246
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 22/224 (9%)
Query: 95 WMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDK-EWALQLLSVACL 153
W + AR V WI++T F F +TAY+A+ Y DRF RR VDR+ WA +LLS+AC+
Sbjct: 95 WFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACV 154
Query: 154 SLAAKVEERRPPRLPEFKLD---MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAK 210
S+AAK+EE + P L EF ++ S+ RMELLVL+TL W+M TPF +L CF+++
Sbjct: 155 SVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSR 214
Query: 211 F-------------RHDERKAIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKET 257
+ L A+ IFA+ + S + Y+PST+A AAIL A
Sbjct: 215 LHRHHHGGAGAAGHGAAAAARVALNAVGFIFATAEAGSVLDYRPSTVAAAAILAA--SYG 272
Query: 258 APNLDE-LKSVVGSLWQQ--LDTGHVYSCYNKMMIQEDRSMQST 298
AP E L+S + +L +D +V++CY+ M+ + + +S+
Sbjct: 273 APLTKEALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSS 316
>Os03g0392000
Length = 386
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 124/250 (49%), Gaps = 19/250 (7%)
Query: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLA--RRCVDRDKEWALQLLSVACLSLAA 157
R + WI K A + F AY+AV YLDRFL+ V D W QLL VACLSLAA
Sbjct: 104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAA 163
Query: 158 KVEERRPPRL-------PEFKLDMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAK 210
K+EE P PE+ ++D ++ RME++VLTTLKW+M TPF+Y+ F K
Sbjct: 164 KMEETAAPGTLDLQVCNPEY---VFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDK 220
Query: 211 FRHDER--KAIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETAPNLDELKSVV 268
R ++ R E I +++K + ++PS IA A+ ++ + LD V+
Sbjct: 221 INEGNRITSELISRCTEIILSTMKATVFLRFRPSEIA-TAVALSVVADGGRVLD-FGGVL 278
Query: 269 GSLWQQLDTGHVYSCYNKMMIQEDRSMQSTTEVASSGVSVAHIGGSEDS-AMGGANNATT 327
S +D +V C+ M QE + + + SG V+ G D MG A A T
Sbjct: 279 ESSKLPVDKDNVGRCHQAM--QEMALVMQNSTASPSGECVSLQSGPRDELEMGWAPFAIT 336
Query: 328 LEATPDKKRK 337
+ + +R+
Sbjct: 337 VSEKEESERR 346
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Query: 104 VGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERR 163
V WI+K + F TAY+AV+Y+DRF++ R + D WA QLL VACLSLAAK+EE
Sbjct: 129 VSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEESS 187
Query: 164 PPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDER--K 217
P L + +++ +++ ++ RMEL+VL L W++ + TPF++++ F K R +
Sbjct: 188 APPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSR 247
Query: 218 AIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETA 258
+ LRA + I ++I + + + S++A AA+L A N+ A
Sbjct: 248 ILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPA 288
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKV 159
R+ +GWI + + FS TAY+AV YLDRFL++ + ++W QLLSVACLS+AAK+
Sbjct: 110 RSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKM 169
Query: 160 EERRPPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDE 215
EE P+ + ++ +++ ++ RMELLVLT L W+M TPFSY++ F K
Sbjct: 170 EETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGN 229
Query: 216 R--KAIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETAPNLDELKSVVGSLWQ 273
++ +LR+ E I + ++PS IA A + T ++ + +
Sbjct: 230 AAPRSWLLRSSELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGV----VEEDIAEAFT 285
Query: 274 QLDTGHVYSC 283
+D G V C
Sbjct: 286 HVDKGRVLQC 295
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 31/269 (11%)
Query: 95 WMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLS 154
W K+A + WI K ++ + F + Y+AV YLDRFL+ + D+ W QLLSV+CLS
Sbjct: 94 WRKDA----IDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLS 149
Query: 155 LAAKVEERRPPRLPEFKLDMYDCASLM------RMELLVLTTLKWQMITETPFSYLNCFT 208
LA K+EE P LP L ++D + RMEL+V+ TLKW++ TPFS++ F
Sbjct: 150 LATKMEETVVP-LP-MDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFL 207
Query: 209 AKFRHDERKAIVLRA--IECIFASIKVISSVGYQPSTIALAAILIARNKETAPNLDELKS 266
KF + + L + + ++K + ++PS IA A +L + S
Sbjct: 208 DKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIAAAVVLAVLAEN---QFLVFNS 264
Query: 267 VVGSLWQQLDTGHVYSCY----NKMMIQEDRSMQSTTEVASSGVSVAHIG----GSEDSA 318
+G ++ V CY K ++++ R+ +++ V S ++V S+D+
Sbjct: 265 ALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNASSSVPHSPITVLDAACFSFRSDDTT 324
Query: 319 MG----GANNA--TTLEATPDKKRKRLHS 341
+G +NN + ++ P KR+RL++
Sbjct: 325 LGSSQSNSNNKDYNSQDSAPASKRRRLNT 353
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 104 VGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERR 163
+ WI K ++ + F+ TA +AV YLDRFL+ + K+W QLL+VACLSLAAK+EE
Sbjct: 107 IDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETD 166
Query: 164 PPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDERKA- 218
P+ + ++ +++ ++ RMELLVL+TLKW+M TPFSY++ F + + +
Sbjct: 167 VPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSG 226
Query: 219 -IVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETA 258
L + E I + +G++PS IA A +E A
Sbjct: 227 RSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEHA 267
>Os06g0217900 Cyclin-like domain containing protein
Length = 223
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 146 QLLSVACLSLAAKVEERRPPRLPEFKL----DMYDCASLMRMELLVLTTLKWQMITETPF 201
QLL+VA LSLAAK+EE P + ++ +++ ++ RMEL VL LKW+M T
Sbjct: 17 QLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTAC 76
Query: 202 SYLNCFTAKFRHDERKAI--VLRAIECIFASIKVISSVGYQPSTIALAAILIARNKETAP 259
S+++ + KF D+ + + R+++ I ++ KV + ++PS IA + L+A +
Sbjct: 77 SFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETS 136
Query: 260 NLDELKSVVGSLWQQLDTGHVYSCYNKMMIQED--------RSMQSTTEVASSGVSVAHI 311
+ V + ++ L V CY MIQ+ +S S + S + V
Sbjct: 137 MFER----VATCYKNLKKERVLRCYE--MIQDKIIMRNIMRQSAGSVFSIPKSPIGVLDA 190
Query: 312 GG-----SEDSAMGGANNATTLEATPDKKRKRL 339
SED+ +G AT E++ KR+R+
Sbjct: 191 AACISQQSEDTFVGSP--ATNYESSASSKRRRI 221
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 99 ARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAK 158
ARA V WI+K F TAY+AV Y+DRFL+ R + + WA+QLL+VACLSLAAK
Sbjct: 81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAK 140
Query: 159 VEERRPPRLPEFK 171
+EE P L + +
Sbjct: 141 MEETLVPSLLDLQ 153
>Os01g0233500 Cyclin
Length = 508
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 17/164 (10%)
Query: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKV 159
RA + W+V+ +R T Y+ V Y+DR+L+ ++R + LQLL VAC+ +AAK
Sbjct: 274 RAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQR---LQLLGVACMLIAAKY 330
Query: 160 EERRPPRLPEF---KLDMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRH--- 213
EE P++ EF + Y ++ ME VL LK+++ T CF +F
Sbjct: 331 EEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPT----AKCFLRRFVRVAQ 386
Query: 214 --DERKAIVLRAIECIFASIKVI--SSVGYQPSTIALAAILIAR 253
DE A+ L + A + ++ + + Y PS +A +AI +A+
Sbjct: 387 VSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAK 430
>Os03g0208800
Length = 406
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 98 NARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAA 157
N R V W+ + GF Y+AV+Y+DRFL+R V+R++ LQLL + L +A+
Sbjct: 167 NMRGKLVNWMEELVYGFNLWDNILYLAVSYVDRFLSRNVVNRER---LQLLGTSALFVAS 223
Query: 158 KVEERRPPRLPEFK---LDMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHD 214
K E+R P F D Y ++ ME +L+ L +QM + T ++L F R
Sbjct: 224 KYEDRCHPSARFFSSITADTYTTQQVVAMEANILSFLNFQMGSPTVITFLRRFLFSCRGS 283
Query: 215 ERKAIVLRAIECIF-ASIKVIS--SVGYQPSTIALAAILIAR---NKETAP 259
R + + CI+ A + ++ ++ + PS +A A + + + N T P
Sbjct: 284 NRPINIRLELMCIYLAELSLLDDYNIRFLPSIVAAACLFVGKFTLNPNTRP 334
>Os03g0607600 Similar to Cyclin
Length = 395
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 98 NARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAA 157
N R V W+V+ ++ T Y+ V+Y+DRFL+ + ++R K LQLL V+ + +A+
Sbjct: 137 NMRGILVDWLVEVAEEYKLVSDTLYLTVSYIDRFLSAKSINRQK---LQLLGVSAMLIAS 193
Query: 158 KVEERRPPRLPEF---KLDMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHD 214
K EE PP + +F + Y +++ME +L LK++M T ++L F + D
Sbjct: 194 KYEEISPPNVEDFCYITDNTYMKQEVVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQED 253
Query: 215 ER 216
++
Sbjct: 254 DK 255
>Os04g0563700 Cyclin
Length = 420
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKV 159
RA + W+++ + F +T ++ V +DRFL ++ V R K LQL+ V + LA K
Sbjct: 187 RAILIDWLIEVHHKFELMDETLFLTVNIVDRFLEKQVVPRKK---LQLVGVTAMLLACKY 243
Query: 160 EERRPPRLPEFKL---DMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDER 216
EE P + + L Y ++ ME L+L TL++ M TP+ ++ F + D
Sbjct: 244 EEVAVPVVEDLVLISDRAYTKGQILEMEKLILNTLQFNMSVPTPYVFMRRFLKAAQSD-- 301
Query: 217 KAIVLRAIECIFASIKVISSVGYQPSTIALAAILIAR 253
K + L + + S+ + Y+PS +A AA+ A+
Sbjct: 302 KQLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQ 338
>Os12g0581800 Cyclin-like domain containing protein
Length = 385
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 98 NARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAA 157
N RA V W+V+ ++ T Y+AV+YLDR+L+ + R++ LQLL V + +AA
Sbjct: 149 NMRAILVDWLVEVADEYKLVADTLYLAVSYLDRYLSAHPLRRNR---LQLLGVGAMLIAA 205
Query: 158 KVEERRPPRLPEF---KLDMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHD 214
K EE PP + +F + Y +++ME +L L+++M T ++L FT + D
Sbjct: 206 KYEEISPPHVEDFCYITDNTYTRQEVVKMESDILKLLEFEMGNPTIKTFLRRFTRSCQED 265
Query: 215 ERKAIVL 221
++++ +L
Sbjct: 266 KKRSSLL 272
>Os12g0502300 Similar to Cyclin A-like protein (Fragment)
Length = 490
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 97 KNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLA 156
K R + W+V+ + ++ T Y+ + +DRFL++ ++R K LQLL + + +A
Sbjct: 258 KGMRGILIDWLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQK---LQLLGITSMLIA 314
Query: 157 AKVEERRPPRLPEFKL---DMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRH 213
+K EE PR+ EF + Y A +++ME LVL + + + T ++L F +
Sbjct: 315 SKYEEICAPRVEEFCFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQA 374
Query: 214 DER-KAIVLRAIECIFASIKVI--SSVGYQPSTIALAAILIAR 253
+I L + A + +I S + + PS +A +A+ +AR
Sbjct: 375 SRNVPSITLGYLANYLAELTLIDYSFLKFLPSVVAASAVFLAR 417
>Os06g0726800 G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2)
Length = 419
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKV 159
R + W+++ + +T ++ V +DRFLAR V R K LQL+ V + LA K
Sbjct: 195 RGILIDWLIEVHYKLELLDETLFLTVNIIDRFLARENVVRKK---LQLVGVTAMLLACKY 251
Query: 160 EERRPPRLPEFKL---DMYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDER 216
EE P + + L Y ++ ME +++ TL++ M TP+ ++ F + D
Sbjct: 252 EEVSVPVVEDLILICDRAYTRTDILEMERMIVNTLQFDMSVPTPYCFMRRFLKAAQSD-- 309
Query: 217 KAIVLRAIECIFASIKVISSVGYQPSTIALAAILIAR 253
K + L + I S+ + +QPS +A AAI A+
Sbjct: 310 KKLELMSFFIIELSLVEYEMLKFQPSMLAAAAIYTAQ 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,503,327
Number of extensions: 330141
Number of successful extensions: 911
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 19
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)