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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0466100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.0383) R2 : 0.68
β1 : -2.62 (0.155) R2dD : 0.268 R2D : 0.0311
β2 : 2.46 (0.092) R2dC : 0.539 R2C : 0.364
β3 : -1.61 (0.152) R2dE : 0.0914 R2E : -0.12
β4 : -2.48 (0.373) R2dD*C : 0.0375 R2D*C : -0.0524
β5 : 2.71 (0.481) R2dD*E : 0.0323 R2D*E : -0.101
γ1 : -0.901 (0.0837) R2dN8 : 0.12 R2N8 : -0.0247
σ : 0.705
deviance : 225.07
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_____
C
peak time of C : 0.605
E
wheather : temperature
threshold : 20.51
memory length : 252
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.59
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
225.07 0.705 4.7 -2.62 2.46 -1.61 -2.48 2.71 -0.901 0.605 20.51 252 4.59 --
240.05 0.722 4.65 -2.26 2.47 -1.69 -1.72 -- -0.807 0.577 20.5 234 4.83 --
247.22 0.732 4.68 -2.46 2.39 -1.56 -- 2.12 -0.851 0.63 20.5 334 4.82 --
249.34 0.735 4.66 -2.14 2.47 -1.63 -- -- -0.804 0.603 20.52 170 3.42 --
497.26 1.04 4.7 -2.97 -- -1.49 -- 2.93 -1 -- 20.8 871 4.31 --
299.16 0.811 4.61 -1.98 2.17 -- -1.35 -- -0.586 0.236 -- -- -- --
306.96 0.82 4.6 -1.93 2.17 -- -- -- -0.581 0.306 -- -- -- --
281.88 0.782 4.56 -2.01 -- -2.75 -- -- -0.562 -- 29.49 1219 4.7 --
372.26 0.904 4.59 -- 2.41 -1.11 -- -- -0.501 0.401 20.52 170 3.42 --
603.51 1.15 4.56 -1.86 -- -- -- -- -0.547 -- -- -- -- --
405.18 0.942 4.55 -- 2.14 -- -- -- -0.366 0.258 -- -- -- --
388.85 0.918 4.49 -- -- -2.63 -- -- -0.258 -- 31.5 1275 4.47 --
694.6 1.23 4.51 -- -- -- -- -- -0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.45 temperature 15 720 > th dose dependent rect. 16 5
4 225.13 temperature 10 720 > th dose dependent rect. 16 10
5 225.33 temperature 20 90 > th dose independent rect. 16 13
6 225.67 temperature 15 720 > th dose dependent rect. 16 8
12 226.15 temperature 10 720 > th dose dependent rect. 16 12
23 228.12 temperature 20 270 < th dose independent rect. 21 10
30 228.51 radiation 10 4320 > th dose dependent rect. 17 1
55 230.78 temperature 20 270 < th dose independent sin 11 NA
56 230.85 radiation 1 720 > th dose dependent rect. 18 11
85 232.40 temperature 20 270 < th dose independent rect. 17 14
87 232.44 temperature 30 720 < th dose dependent rect. 19 4
96 232.77 temperature 20 270 > th dose independent sin 11 NA
97 232.78 temperature 30 720 < th dose dependent rect. 17 6
117 233.38 temperature 20 270 < th dose independent rect. 12 19
135 233.97 temperature 10 720 > th dose dependent sin 16 NA
171 235.51 radiation 1 720 > th dose dependent rect. 18 1
294 238.59 radiation 20 4320 < th dose independent rect. 17 10
303 238.74 radiation 30 14400 > th dose dependent rect. 16 16
311 238.87 radiation 10 14400 > th dose independent rect. 5 1
358 239.70 temperature 25 270 < th dose dependent rect. 12 20
364 239.78 radiation 30 14400 > th dose dependent rect. 7 1
387 239.90 radiation 20 4320 < th dose independent rect. 17 6
391 239.96 radiation 20 4320 < th dose independent rect. 17 13
393 239.97 temperature 10 270 > th dose dependent sin 12 NA
401 240.14 temperature 30 720 < th dose dependent sin 16 NA
425 240.61 humidity 50 43200 < th dose dependent rect. 8 1
427 240.62 temperature 10 720 > th dose dependent rect. 8 18
450 240.97 radiation 20 4320 < th dose independent rect. 17 2
475 241.28 temperature 20 720 > th dose dependent rect. 10 18
478 241.29 radiation 30 14400 < th dose independent rect. 16 16
489 241.38 temperature 20 90 > th dose independent rect. 8 22
500 241.52 wind 5 43200 > th dose independent rect. 6 1
517 241.74 humidity 50 43200 > th dose independent rect. 4 4
550 242.06 wind 5 43200 < th dose independent rect. 6 1
551 242.06 radiation 20 1440 < th dose dependent rect. 18 9
561 242.14 wind 9 43200 < th dose dependent rect. 9 1
571 242.26 wind 1 43200 > th dose dependent rect. 9 1
586 242.37 temperature 20 720 < th dose independent rect. 21 3
655 242.96 temperature 10 720 > th dose dependent rect. 8 14
656 242.97 radiation 30 14400 < th dose independent rect. 7 1
662 243.05 wind 9 43200 > th dose dependent rect. 20 10
665 243.08 wind 3 43200 > th dose dependent rect. 2 14
695 243.29 wind 5 43200 > th dose dependent rect. 6 1
738 243.48 radiation 30 14400 < th dose independent rect. 22 10
752 243.53 wind 7 43200 < th dose dependent rect. 3 13
757 243.56 radiation 30 14400 > th dose independent rect. 7 1
803 243.71 humidity 50 43200 < th dose dependent rect. 19 15
808 243.76 radiation 30 14400 < th dose independent rect. 2 6
815 243.77 wind 7 43200 < th dose dependent rect. 4 11
823 243.80 wind 5 43200 < th dose independent rect. 1 16
824 243.80 radiation 20 1440 < th dose dependent rect. 18 2
826 243.81 wind 3 43200 > th dose dependent sin 3 NA
846 243.94 humidity 80 43200 > th dose independent rect. 22 3
859 243.98 wind 5 43200 > th dose independent rect. 1 16
890 244.11 wind 5 43200 > th dose independent rect. 2 14
949 244.29 wind 9 43200 < th dose dependent sin 3 NA
987 244.42 humidity 80 43200 < th dose independent rect. 22 2
999 244.45 wind 9 43200 < th dose independent rect. 20 11