BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0466100 Os09g0466100|AB080248
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0466100 Cyclin-like domain containing protein 545 e-155
Os08g0479300 Cyclin-like domain containing protein 277 7e-75
Os07g0620800 Cyclin-like domain containing protein 226 2e-59
Os03g0392000 174 8e-44
Os06g0217900 Cyclin-like domain containing protein 147 1e-35
Os06g0236600 Similar to Cyclin delta-1 137 1e-32
Os09g0382300 Similar to Cyclin D3.1 protein 109 4e-24
Os12g0588800 Cyclin-like domain containing protein 96 4e-20
Os03g0203800 Cyclin-like domain containing protein 96 4e-20
Os03g0617500 Cyclin-like domain containing protein 92 4e-19
Os07g0556000 Cyclin-like domain containing protein 92 4e-19
Os09g0111100 Cyclin-like domain containing protein 87 2e-17
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/356 (78%), Positives = 280/356 (78%)
Query: 1 MAALTSYEMAASILLCAEDSSSVLGFGGXXXXXXXDVVAGKXXXXXXXXXXXXXXXXXXX 60
MAALTSYEMAASILLCAEDSSSVLGFGG DVVAGK
Sbjct: 1 MAALTSYEMAASILLCAEDSSSVLGFGGEEEEEEEDVVAGKRARCAGPPPPPCVDVAGVD 60
Query: 61 FAVPSEECVARLVETEADHMPREDYAEXXXXXXXXXXXXXXVRMDAIDWIWKVHSYYSFA 120
FAVPSEECVARLVETEADHMPREDYAE VRMDAIDWIWKVHSYYSFA
Sbjct: 61 FAVPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFA 120
Query: 121 PLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERY 180
PLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERY
Sbjct: 121 PLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERY 180
Query: 181 VFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIA 240
VFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIA
Sbjct: 181 VFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIA 240
Query: 241 RGTECLGFRPSXXXXXXXXXXXXXXXXXFSHVNKERMSHCQEVIQAMELIHXXXXXXXXX 300
RGTECLGFRPS FSHVNKERMSHCQEVIQAMELIH
Sbjct: 241 RGTECLGFRPSEIAAAVAAAVVGEEHAAFSHVNKERMSHCQEVIQAMELIHPKPSSPSRV 300
Query: 301 XXXXXXXXXXTGVLDAAGCLSYRSDDSAVASHYAASSWGYEHDSSPVSSKRRKISR 356
TGVLDAAGCLSYRSDDSAVASHYAASSWGYEHDSSPVSSKRRKISR
Sbjct: 301 FVSSSIPRSPTGVLDAAGCLSYRSDDSAVASHYAASSWGYEHDSSPVSSKRRKISR 356
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 175/379 (46%), Positives = 211/379 (55%), Gaps = 33/379 (8%)
Query: 7 YEMAASILLCAEDSSSVLGF-------GGXXXXXXXDVVAGKXXXXXXXXXXXXXXXXXX 59
++ AAS+LLCAED+SS+L G +V
Sbjct: 9 HDAAASMLLCAEDNSSILWLEDEEGEVGERRSGGCRSMVGDLAAGGGGGSGGGGVEEEED 68
Query: 60 XFAVPSEECVARLVETEADHMPREDYAEXXXXXXXXXXXXXXVRMDAIDWIWKVHSYYSF 119
F SEECVA LVE E HMPR DY E VR +AI WIW+V++YY+F
Sbjct: 69 MFPRQSEECVASLVEREQAHMPRADYGERLRGGGGDVDLR--VRSEAIGWIWEVYTYYNF 126
Query: 120 APLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEER 179
+ +TA LAVNYLDRFLS Y+LP+G+DWMTQLL+VACLS+AAKMEET VPQ LDLQ+GE R
Sbjct: 127 SSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPR 186
Query: 180 YVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCI 239
++FE +TI RMELLVL+ L WRMQAVTPFSY+DYFLR+LN G+ L SSELIL I
Sbjct: 187 FLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRI 246
Query: 240 ARGTECLGFRPSXXXX--------XXXXXXXXXXXXXFSHVNKERMSHCQEVIQ----AM 287
A GT L FRPS F+HV+K R+ CQE IQ +M
Sbjct: 247 AAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAFTHVDKGRVLQCQEAIQDHHYSM 306
Query: 288 ELIHXXXXXXXXXXX------XXXXXXXXTGVLDAAGCLSYRSDDS---AVASHYAASSW 338
I+ VLD AGCLSY+SDD+ +ASH
Sbjct: 307 ATINTVQPKPASTRRGSASASSSSVPESPVAVLD-AGCLSYKSDDTDAATIASHGGGRRK 365
Query: 339 GYEHDSSPVSS-KRRKISR 356
DSSPV+S KRRK+SR
Sbjct: 366 SC-FDSSPVTSKKRRKLSR 383
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/354 (41%), Positives = 186/354 (52%), Gaps = 22/354 (6%)
Query: 10 AASILLCAEDSSSVLGFGGXXXXXXXDVVAGKXXXXXXXXXXXXXXXXXXXFAVPSEECV 69
A++ILLCAEDSSSVLG GG VA + F + S+E V
Sbjct: 8 ASNILLCAEDSSSVLGLGGFGGGGGE--VAAELGCGGGGGFDFFGFGGGAVFPIDSDEFV 65
Query: 70 ARLVETEADHMPREDYAEXXXXXXXXXXXXXXVRMDAIDWIWKVHSYYSFAPLTACLAVN 129
A LVE E DH P+ Y E R DAIDWI KVHSYY+F PL+ LAVN
Sbjct: 66 ALLVEKEMDHQPQRGYLEKLELGGLECSW----RKDAIDWICKVHSYYNFGPLSLYLAVN 121
Query: 130 YLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQR 189
YLDRFLS + LP + WM QLL+V+CLSLA KMEET VP +DLQV + YVFEA+ I+R
Sbjct: 122 YLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKR 181
Query: 190 MELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFR 249
MEL+V+ TLKWR+QAVTPFS++ YFL + N G PPS A S+L + + + L FR
Sbjct: 182 MELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFR 241
Query: 250 PSXXXXXXXXXXXXXXXXXFSH---------VNKERMSHCQEVIQAMELIHXXXXXXXXX 300
PS + VNKE + C E++ L+
Sbjct: 242 PSEIAAAVVLAVLAENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVK----KIRNS 297
Query: 301 XXXXXXXXXXTGVLDAAGCLSYRSDDSAVASHYAASSWG--YEHDSSPVSSKRR 352
VLDAA C S+RSDD+ + S + S+ DS+P S +RR
Sbjct: 298 NASSSVPHSPITVLDAA-CFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRR 350
>Os03g0392000
Length = 386
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 103 RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKD--WMTQLLAVACLSLAA 160
R+ AIDWI KV +YYSF PL A LAVNYLDRFLS + D WM QLL VACLSLAA
Sbjct: 104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAA 163
Query: 161 KMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNG 220
KMEET P +LDLQV YVF+A+TI RME++VL+TLKWRMQAVTPF+Y+ +FL ++N
Sbjct: 164 KMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINE 223
Query: 221 GDPPSGRSALLSSELILCIARGTECLGFRPSXXXXXXXXXXXXXXXXXFSH--------- 271
G+ + +E+IL + T L FRPS
Sbjct: 224 GNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKL 283
Query: 272 -VNKERMSHCQEVIQAMELI 290
V+K+ + C + +Q M L+
Sbjct: 284 PVDKDNVGRCHQAMQEMALV 303
>Os06g0217900 Cyclin-like domain containing protein
Length = 223
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 118/218 (54%), Gaps = 17/218 (7%)
Query: 147 MTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVT 206
MTQLLAVA LSLAAKMEET VP LDLQV + +YVFE +TI+RMEL VL+ LKWRMQAVT
Sbjct: 15 MTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVT 74
Query: 207 PFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSXXXXXXX-------- 258
S++DY+L + N D PS + S +LIL + E L FRPS
Sbjct: 75 ACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHE 134
Query: 259 XXXXXXXXXXFSHVNKERMSHCQEVIQAMELIHXXXXXXXXXXXXXXXXXXXTGVLDAAG 318
+ ++ KER+ C E+IQ + I GVLDAA
Sbjct: 135 TSMFERVATCYKNLKKERVLRCYEMIQ--DKIIMRNIMRQSAGSVFSIPKSPIGVLDAAA 192
Query: 319 CLSYRSDDSAVASHYAASSWGYEHDSSPVSSKRRKISR 356
C+S +S+D+ V S + YE S SSKRR+I R
Sbjct: 193 CISQQSEDTFVGS----PATNYE---SSASSKRRRICR 223
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 105 DAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEE 164
+++ WI KV S + F P TA LAV+Y+DRF+S LPD W +QLL VACLSLAAKMEE
Sbjct: 127 ESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPD-HGWASQLLCVACLSLAAKMEE 185
Query: 165 TDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPP 224
+ P LDLQ+ R++FE +TIQRMEL+VL L WR+++VTPF++VD+F ++
Sbjct: 186 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRS 245
Query: 225 SGRSALLSSELIL 237
S AL + ++IL
Sbjct: 246 SRILALRACQIIL 258
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 69 VARLVETEADHMPREDYAEXXXXXXXXXXXXXXVRMDAIDWIWKVHSYYSFAPLTACLAV 128
+A L+ EA++ PR DY + R +++ WI KV Y F PLTA LAV
Sbjct: 52 IAELIGGEAEYSPRSDYPDRLRSRSIDPA----ARAESVSWILKVQEYNGFLPLTAYLAV 107
Query: 129 NYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQ 174
NY+DRFLSL LP+G+ W QLLAVACLSLAAKMEET VP LDLQ
Sbjct: 108 NYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQ 153
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 103 RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLP-DGKDWMTQLLAVACLSLAAK 161
R+ A+ WI + Y+ F TA LA+ Y DRF ++ + W +LL++AC+S+AAK
Sbjct: 100 RLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAK 159
Query: 162 MEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYF 214
MEE P + G R VF + +I+RMELLVLSTL WRM AVTPF ++ F
Sbjct: 160 MEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Query: 107 IDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETD 166
+ WI K ++ + F+ TA +AV YLDRFL+ + K+W QLL+VACLSLAAK+EE
Sbjct: 104 VGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERR 163
Query: 167 VPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSG 226
P+ + ++ +++ ++ RMELLVL+TLKW+M TPFSY++ F + +
Sbjct: 164 PPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDE---- 215
Query: 227 RSALL--SSELILCIARGTECLGFRPS 251
R A++ + E I + +G++PS
Sbjct: 216 RKAIVLRAIECIFASIKVISSVGYQPS 242
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 103 RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGK--DWMTQLLAVACLSLAA 160
R + WI + + F TA LA+ Y DRF L + D W +LLAVAC+SLAA
Sbjct: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRF-CLRRCIDRSVMPWAARLLAVACVSLAA 106
Query: 161 KMEETDVPQSLDLQ--VGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYV 211
KMEE P + + VG++ Y F I+RMELLVLSTL WRM AVTPF Y+
Sbjct: 107 KMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 61 FAVPSEECVARLVETEADHMPREDYAEXXXXXXXXXXXXXXVRMDA-IDWIWKVHSYYSF 119
F P++E +A L++ E H P A VR D +D VH
Sbjct: 26 FTSPADEPIASLLDAEGHHSP-SVSAAASAARREAAGFISKVRYDGELD----VH----- 75
Query: 120 APLTACLAVNYLDRFLSLYQLP-DGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEE 178
P A LA+NY+DR+LS QL + W +LLA++CL+LAAKM+ + D+Q GEE
Sbjct: 76 -PRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGEE 134
Query: 179 RYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFL 215
++F+ IQRME +VL+ L+WR ++VTP +++ +FL
Sbjct: 135 -FMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFL 170
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 102 VRMDAIDWIWKVHSYYSFAPLTACLAVNYLDR-FLSLYQLPDGKDWMTQLLAVACLSLAA 160
R A+ W + + F+ LTA LAV YLDR FL + WM +L AVAC++LAA
Sbjct: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAA 136
Query: 161 KMEETDVPQSLDLQV-------GEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDY 213
K+EET VP LDLQ+ E YVFE KT++RMELLVLS L WRM VTP SY+
Sbjct: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQP 196
Query: 214 FL 215
L
Sbjct: 197 LL 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,381,223
Number of extensions: 290160
Number of successful extensions: 578
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 12
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)