FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0620800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.0358) R2 : 0.567
β1 : -2.59 (0.133) R2dD : 0.398 R2D : 0.16
β2 : 0.565 (0.0927) R2dC : 0.0385 R2C : 0.00195
β3 : -1.2 (0.0956) R2dE : 0.163 R2E : 0.0944
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.809 (0.0781) R2dN8 : 0.128 R2N8 : 0.0726
σ : 0.666
deviance : 204.33
__
_____
C
peak time of C : 4.93
E
wheather : temperature
threshold : 32.6
memory length : 1206
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.4 0.667 4.93 -1.76 0.576 -0.637 0.338 -4.87 -0.698 4.64 31.4 1225 -- --
211.02 0.677 5.02 -2.19 0.402 -1.15 0.0513 -- -0.71 3.07 32.4 1227 -- --
201.32 0.661 4.93 -1.73 0.577 -0.623 -- -5.19 -0.706 4.62 31.72 1230 -- --
204.33 0.666 5.08 -2.59 0.565 -1.2 -- -- -0.809 4.93 32.6 1206 -- --
218.48 0.688 4.93 -1.68 -- -0.654 -- -5.44 -0.682 -- 32 1233 -- --
272.12 0.773 5.08 -2.28 0.713 -- 0.63 -- -0.935 3.91 -- -- -- --
273.28 0.774 5.08 -2.29 0.717 -- -- -- -0.938 3.91 -- -- -- --
220.87 0.692 5.04 -2.6 -- -1.27 -- -- -0.681 -- 31.9 1235 -- --
374.42 0.901 4.98 -- 0.566 -0.868 -- -- -0.501 4.6 33.1 1198 -- --
301.47 0.811 5.08 -2.26 -- -- -- -- -0.919 -- -- -- -- --
411.39 0.949 5.02 -- 0.673 -- -- -- -0.684 3.96 -- -- -- --
391.55 0.922 4.98 -- -- -0.942 -- -- -0.491 -- 32.3 1201 -- --
436.16 0.975 5.03 -- -- -- -- -- -0.669 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.57 temperature 30 1440 > th dose dependent sin 14 NA
4 204.89 temperature 30 1440 > th dose dependent rect. 14 5
73 205.61 humidity 80 1440 < th dose dependent rect. 16 5
104 206.14 humidity 80 1440 < th dose dependent rect. 18 2
162 206.65 temperature 30 1440 > th dose dependent no NA NA
178 206.65 radiation 10 1440 > th dose dependent rect. 16 15
261 206.86 temperature 30 1440 > th dose independent rect. 16 3
312 207.46 temperature 30 1440 < th dose independent rect. 16 5
313 207.46 temperature 30 1440 < th dose independent rect. 16 7
315 207.46 temperature 30 1440 < th dose independent rect. 16 12
323 207.51 temperature 30 1440 < th dose independent rect. 16 15
330 207.69 radiation 20 1440 > th dose dependent rect. 15 17
331 207.72 humidity 80 1440 < th dose dependent rect. 16 16
382 208.11 radiation 10 1440 > th dose independent rect. 15 16
393 208.24 radiation 30 1440 < th dose dependent rect. 16 15
408 208.58 temperature 30 1440 < th dose independent rect. 17 19
410 208.63 temperature 30 1440 < th dose independent sin 11 NA
417 208.70 radiation 40 1440 < th dose dependent rect. 15 17
419 208.74 radiation 1 1440 > th dose dependent rect. 15 17
421 208.80 temperature 30 1440 > th dose independent sin 11 NA
442 208.92 humidity 70 1440 > th dose independent sin 13 NA
443 208.92 temperature 30 1440 > th dose independent rect. 17 19
458 209.27 humidity 80 1440 < th dose dependent sin 14 NA
475 209.50 temperature 25 1440 > th dose dependent rect. 6 2
481 209.59 humidity 70 1440 < th dose independent sin 13 NA
493 209.78 radiation 10 1440 > th dose independent sin 13 NA
496 209.83 humidity 70 1440 > th dose independent rect. 17 12
503 209.88 radiation 20 1440 > th dose independent rect. 16 1
518 209.89 humidity 70 1440 > th dose independent rect. 17 4
519 209.89 humidity 70 1440 > th dose independent rect. 17 8
647 210.49 humidity 70 1440 < th dose independent rect. 16 4
664 210.54 humidity 50 1440 > th dose dependent rect. 15 5
669 210.61 radiation 10 1440 < th dose independent rect. 16 15
682 210.73 radiation 10 1440 > th dose dependent rect. 16 2
732 210.88 temperature 30 14400 > th dose dependent rect. 17 2
774 211.07 radiation 20 1440 < th dose dependent sin 13 NA
806 211.25 humidity 70 1440 < th dose independent rect. 18 2
839 211.42 temperature 30 1440 > th dose independent rect. 9 10
888 211.50 temperature 30 1440 < th dose independent rect. 9 12
889 211.50 temperature 30 1440 < th dose independent rect. 9 19
891 211.51 temperature 30 1440 < th dose independent rect. 9 10
908 211.55 temperature 30 1440 < th dose independent rect. 9 4
911 211.62 radiation 20 1440 < th dose independent rect. 16 1
946 211.81 temperature 30 1440 > th dose independent rect. 9 4
949 211.83 humidity 70 14400 < th dose independent rect. 19 1
977 211.94 humidity 50 1440 > th dose dependent rect. 16 1
983 211.96 temperature 30 1440 < th dose independent rect. 2 17
984 211.96 temperature 30 1440 < th dose independent rect. 2 19
987 211.97 temperature 30 1440 < th dose independent rect. 6 13
989 211.97 temperature 30 1440 < th dose independent rect. 6 15