BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0620800 Os07g0620800|AK063671
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0620800 Cyclin-like domain containing protein 595 e-170
Os09g0466100 Cyclin-like domain containing protein 235 4e-62
Os03g0392000 228 6e-60
Os08g0479300 Cyclin-like domain containing protein 206 1e-53
Os06g0217900 Cyclin-like domain containing protein 184 8e-47
Os06g0236600 Similar to Cyclin delta-1 131 6e-31
Os03g0203800 Cyclin-like domain containing protein 100 3e-21
Os07g0556000 Cyclin-like domain containing protein 98 7e-21
Os09g0382300 Similar to Cyclin D3.1 protein 94 2e-19
Os12g0588800 Cyclin-like domain containing protein 90 2e-18
Os09g0111100 Cyclin-like domain containing protein 83 4e-16
Os08g0421100 Cyclin-like domain containing protein 82 5e-16
Os03g0617500 Cyclin-like domain containing protein 82 6e-16
Os12g0502300 Similar to Cyclin A-like protein (Fragment) 67 2e-11
Os04g0563700 Cyclin 67 2e-11
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 595 bits (1533), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/356 (83%), Positives = 297/356 (83%)
Query: 1 MGVLCFGASNILLCAEDSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPID 60
MGVLCFGASNILLCAEDSSS PID
Sbjct: 1 MGVLCFGASNILLCAEDSSSVLGLGGFGGGGGEVAAELGCGGGGGFDFFGFGGGAVFPID 60
Query: 61 SDEFVALLVEKEMDHQPQRXXXXXXXXXXXXCSWRKDAIDWICKVHSYYNFGPLSLYLAV 120
SDEFVALLVEKEMDHQPQR CSWRKDAIDWICKVHSYYNFGPLSLYLAV
Sbjct: 61 SDEFVALLVEKEMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAV 120
Query: 121 NYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIK 180
NYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIK
Sbjct: 121 NYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIK 180
Query: 181 RMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSF 240
RMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSF
Sbjct: 181 RMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSF 240
Query: 241 RPSEIXXXXXXXXXXENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNAS 300
RPSEI ENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNAS
Sbjct: 241 RPSEIAAAVVLAVLAENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNAS 300
Query: 301 SSVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTPI 356
SSVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTPI
Sbjct: 301 SSVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTPI 356
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 175/301 (58%), Gaps = 20/301 (6%)
Query: 59 IDSDEFVALLVEKEMDHQPQRXXXXXXXXXXXXCSW----RKDAIDWICKVHSYYNFGPL 114
+ S+E VA LVE E DH P+ R DAIDWI KVHSYY+F PL
Sbjct: 63 VPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPL 122
Query: 115 SLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVF 174
+ LAVNYLDRFLS + LP + WM QLL+V+CLSLA KMEET VP +DLQV + YVF
Sbjct: 123 TACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVF 182
Query: 175 EARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKD 234
EA+ I+RMEL+V+ TLKWR+QAVTPFS++ YFL + N G PPS A S+L + +
Sbjct: 183 EAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARG 242
Query: 235 SRFLSFRPSEIXXXXXXXXXXENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKI 294
+ L FRPSEI E + VNKE + C E++ L+
Sbjct: 243 TECLGFRPSEIAAAVAAAVVGEEHAAFSH---------VNKERMSHCQEVIQAMELIHPK 293
Query: 295 RNSNA----SSSVPHSPITVLDAA-CFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRR 349
+S + SSS+P SP VLDAA C S+RSDD+ + S + S+ DS+P S +R
Sbjct: 294 PSSPSRVFVSSSIPRSPTGVLDAAGCLSYRSDDSAVASHYAASSWG--YEHDSSPVSSKR 351
Query: 350 R 350
R
Sbjct: 352 R 352
>Os03g0392000
Length = 386
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/213 (54%), Positives = 149/213 (69%), Gaps = 5/213 (2%)
Query: 93 SWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSS--FNLPHDESWMQQLLSVSCLSL 150
S R AIDWICKV +YY+FGPL YLAVNYLDRFLSS F++ +D WMQQLL V+CLSL
Sbjct: 102 SCRIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSL 161
Query: 151 ATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKF 210
A KMEET P +DLQV + EYVF+A I RME+IV+ TLKWR+QAVTPF++IG+FLDK
Sbjct: 162 AAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI 221
Query: 211 NEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIXXXXXXXXXXE-NQFLVFNSALGES 269
NEG + L S C+++ + T+K + FL FRPSEI + + L F L S
Sbjct: 222 NEGNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESS 281
Query: 270 EIPVNKEMVMRCYELMVEKALVKKIRNSNASSS 302
++PV+K+ V RC++ M E ALV ++NS AS S
Sbjct: 282 KLPVDKDNVGRCHQAMQEMALV--MQNSTASPS 312
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 178/315 (56%), Gaps = 23/315 (7%)
Query: 58 PIDSDEFVALLVEKEMDHQPQRXXXXXXXXXXXXCSWR--KDAIDWICKVHSYYNFGPLS 115
P S+E VA LVE+E H P+ R +AI WI +V++YYNF ++
Sbjct: 71 PRQSEECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFSSVT 130
Query: 116 LYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFE 175
YLAVNYLDRFLS + LP WM QLLSV+CLS+A KMEETVVP +DLQ+ + ++FE
Sbjct: 131 AYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFE 190
Query: 176 ARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGK--PPSYTLASWCSDLTVGTLK 233
I RMEL+V+ L WR+QAVTPFS+I YFL K N G P S+ L S S+L +
Sbjct: 191 VETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRS--SELILRIAA 248
Query: 234 DSRFLSFRPSEIXXXXXXXXXXENQFLVFNSALGESEIPVNKEMVMRCYELMVEK----A 289
+ FL FRPSEI E +V + E+ V+K V++C E + + A
Sbjct: 249 GTGFLEFRPSEIAAAVAATVAGEATGVV-EEDIAEAFTHVDKGRVLQCQEAIQDHHYSMA 307
Query: 290 LVKKIRNSNASS----------SVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNS 339
+ ++ AS+ SVP SP+ VLDA C S++SDDT + S+ + +
Sbjct: 308 TINTVQPKPASTRRGSASASSSSVPESPVAVLDAGCLSYKSDDTDAATIASHGGGRRKSC 367
Query: 340 QDSAPAS--KRRRLN 352
DS+P + KRR+L+
Sbjct: 368 FDSSPVTSKKRRKLS 382
>Os06g0217900 Cyclin-like domain containing protein
Length = 223
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 140/221 (63%), Gaps = 12/221 (5%)
Query: 134 HDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWR 193
+E+ M QLL+V+ LSLA KMEETVVP P+DLQV DA+YVFE R IKRMEL V+ LKWR
Sbjct: 10 QEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWR 69
Query: 194 LQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIXXXXXXXX 253
+QAVT SFI Y+L KFN+ PS + S DL + T K + FL FRPSEI
Sbjct: 70 MQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVA 129
Query: 254 XXENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNASS--SVPHSPITVL 311
E++ +F + + KE V+RCYE++ +K +++ I +A S S+P SPI VL
Sbjct: 130 LEEHETSMFER-VATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSIPKSPIGVL 188
Query: 312 D-AACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRL 351
D AAC S +S+DT +GS +N +S+ +SKRRR+
Sbjct: 189 DAAACISQQSEDTFVGSPATN--------YESSASSKRRRI 221
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 8/206 (3%)
Query: 97 DAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEE 156
+++ WI KV S + F P + YLAV+Y+DRF+SS +LP D W QLL V+CLSLA KMEE
Sbjct: 127 ESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEE 185
Query: 157 TVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPP 216
+ P +DLQ+ ++FE R I+RMELIV+ L WRL++VTPF+F+ +F K
Sbjct: 186 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRS 245
Query: 217 SYTLASWCSDLTVGTLKDSRFLSFRPSEIXXXXXXXXXXENQFLVFNSALGESE------ 270
S LA + + + + FL+ S + E+ + + + SE
Sbjct: 246 SRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWC 305
Query: 271 IPVNKEMVMRCYELMVEKALVKKIRN 296
I + +E + CY+L+ ++AL R
Sbjct: 306 IGLTEERISSCYQLL-QRALNATARK 330
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 32/302 (10%)
Query: 62 DEFVALLVEKEM-DHQPQRXXXXXXXXXXXXCSWRKDA----IDWICKVHSYYNFGPLSL 116
DE++AL++ KE W K+A + WI K ++ + F +
Sbjct: 62 DEYLALMLSKERCAGGGGGGERGDEEEEEMVEEWMKNARAWCVGWIVKTNAGFRFSLKTA 121
Query: 117 YLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVP-LP-MDLQVFDAEYVF 174
Y+AV YLDRFL+ + D+ W QLLSV+CLSLA K+EE P LP L ++D +
Sbjct: 122 YVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLDMYDCASLM 181
Query: 175 EARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKD 234
RMEL+V+ TLKW++ TPFS++ F KF + + L + + ++K
Sbjct: 182 ------RMELLVLTTLKWQMITETPFSYLNCFTAKFRHDERKAIVLRA--IECIFASIKV 233
Query: 235 SRFLSFRPSEIXXXXXXXXXXEN---QFLVFNSALGESEIPVNKEMVMRCYELMVEKALV 291
+ ++PS I + S +G ++ V CY K ++
Sbjct: 234 ISSVGYQPSTIALAAILIARNKETAPNLDELKSVVGSLWQQLDTGHVYSCY----NKMMI 289
Query: 292 KKIRNSNASSSVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRL 351
++ R+ +++ V S ++V S+D+ +G +NN + ++ P KR+RL
Sbjct: 290 QEDRSMQSTTEVASSGVSVAHIG----GSEDSAMG----GANNA--TTLEATPDKKRKRL 339
Query: 352 NT 353
++
Sbjct: 340 HS 341
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 135/286 (47%), Gaps = 23/286 (8%)
Query: 61 SDEFVALLVEKEMDHQPQRXXXXXXXXXXXXCSWRKDAIDWICKVHSYYNFGPLSLYLAV 120
+DE +A L++ E H P K D VH P YLA+
Sbjct: 30 ADEPIASLLDAEGHHSPSVSAAASAARREAAGFISKVRYDGELDVH------PRVAYLAL 83
Query: 121 NYLDRFLSSFNLPHDES-WMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHI 179
NY+DR+LS L + + W +LL++SCL+LA KM+ D+Q + E++F+ I
Sbjct: 84 NYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGE-EFMFDEAKI 142
Query: 180 KRMELIVMKTLKWRLQAVTPFSFIGYFLDK-FNEGKPPSY--TLASWCSDLTVGTLKDSR 236
+RME +V+ L+WR ++VTP +F+G+FL F + + P+ + + DL + + +
Sbjct: 143 QRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDLLLRVQPEVK 202
Query: 237 FLSFRPSEIXXXXXXXXXXE---NQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKK 293
F PS E L F + + VN E + C E+M V
Sbjct: 203 MAEFSPSVAAAAALLAAAGEVAGAHLLGFEAGVAACPF-VNSEKLRECGEVMAAACGVGP 261
Query: 294 IRNSNASSSVPHSPITVLD----AACFSFRSDDTTLGSSQSNSNNK 335
+ A+S+ +P+TVL A+ S R+ TT+GS+ ++++ K
Sbjct: 262 SWAAAATSA--ETPVTVLGHHRSASSESERT--TTVGSAANSADAK 303
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 63/103 (61%)
Query: 65 VALLVEKEMDHQPQRXXXXXXXXXXXXCSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLD 124
+A L+ E ++ P+ + R +++ WI KV Y F PL+ YLAVNY+D
Sbjct: 52 IAELIGGEAEYSPRSDYPDRLRSRSIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMD 111
Query: 125 RFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQV 167
RFLS +LP + W QLL+V+CLSLA KMEET+VP +DLQ
Sbjct: 112 RFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQA 154
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDE-SWMQQLLSVSCLSLATK 153
R A+ WI + Y+ FG + YLA+ Y DRF + + W +LLS++C+S+A K
Sbjct: 100 RLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAK 159
Query: 154 MEETVVPLPMDLQVFDAE--YVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYF 206
MEE P L FDA VF + I+RMEL+V+ TL WR+ AVTPF F+ F
Sbjct: 160 MEEYQSPA---LSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 93 SWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDR-FLSSFNLPHDESWMQQLLSVSCLSLA 151
S R+ A+ W + + F L+ LAV YLDR FL D WM +L +V+C++LA
Sbjct: 76 SAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALA 135
Query: 152 TKMEETVVPLPMDLQVFDAE-------YVFEARHIKRMELIVMKTLKWRLQAVTPFSFIG 204
K+EET VP+ +DLQ+ AE YVFE + ++RMEL+V+ L WR+ VTP S++
Sbjct: 136 AKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQ 195
Query: 205 YFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243
L + + C + + D R+ RPS
Sbjct: 196 PLLGTAHAAR------LHHCDTALLALMPDWRWPRHRPS 228
>Os08g0421100 Cyclin-like domain containing protein
Length = 291
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 41/139 (29%)
Query: 95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKM 154
R D++ WI KV Y P++ YLAV+Y+DRFLS LP M
Sbjct: 116 RADSVAWILKVRELYGMLPVTAYLAVSYMDRFLSLHRLP--------------------M 155
Query: 155 EETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFN-EG 213
E DA Y+FE R I RMEL+V+ L WRL+++TPF+F+ F DK + G
Sbjct: 156 E-------------DARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNG 202
Query: 214 K-------PPSYTLASWCS 225
K + TL+SW +
Sbjct: 203 KHIRELIHQATQTLSSWIT 221
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDES---WMQQLLSVSCLSLA 151
R+ + WI + + F + YLA+ Y DRF + D S W +LL+V+C+SLA
Sbjct: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCI--DRSVMPWAARLLAVACVSLA 105
Query: 152 TKMEETVVPLPMDLQ--VFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFI 203
KMEE P + + V D Y F I+RMEL+V+ TL WR+ AVTPF ++
Sbjct: 106 AKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
>Os12g0502300 Similar to Cyclin A-like protein (Fragment)
Length = 490
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 99 IDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETV 158
IDW+ +V Y P +LYL +N +DRFLS + E QLL ++ + +A+K EE
Sbjct: 265 IDWLVEVSEEYKLVPDTLYLTINLIDRFLSQHYI---ERQKLQLLGITSMLIASKYEEIC 321
Query: 159 VPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKP-PS 217
P + F + + + +ME +V+ + + L T +F+ FL + PS
Sbjct: 322 APRVEEF-CFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVPS 380
Query: 218 YTLASWCSDLTVGTLKDSRFLSFRPSEI 245
TL + L TL D FL F PS +
Sbjct: 381 ITLGYLANYLAELTLIDYSFLKFLPSVV 408
>Os04g0563700 Cyclin
Length = 420
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 99 IDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETV 158
IDW+ +VH + +L+L VN +DRFL +P + QL+ V+ + LA K EE
Sbjct: 191 IDWLIEVHHKFELMDETLFLTVNIVDRFLEKQVVPRKKL---QLVGVTAMLLACKYEEVA 247
Query: 159 VPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSY 218
VP+ DL V ++ + I ME +++ TL++ + TP+ F+ FL K +
Sbjct: 248 VPVVEDL-VLISDRAYTKGQILEMEKLILNTLQFNMSVPTPYVFMRRFL-KAAQSDKQLQ 305
Query: 219 TLASWCSDLTVGTLKDSRFLSFRPS 243
L+ + +L +L + + L +RPS
Sbjct: 306 LLSFFILEL---SLVEYQMLKYRPS 327
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,945,402
Number of extensions: 340712
Number of successful extensions: 807
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 15
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)