Os07g0556000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os07g0556000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.21 | 0.522 | 9.13 | -2.05 | 1.54 | 0.925 | 0.87 | -0.412 | -0.38 | 1.17 | 89 | 759 | -- | -- |
| 123.57 | 0.518 | 9.14 | -2.02 | 1.56 | 0.906 | 0.8 | -- | -0.374 | 1.24 | 89 | 724 | -- | -- |
| 126.04 | 0.523 | 9.13 | -2.04 | 1.53 | 0.917 | -- | -0.0951 | -0.371 | 1.12 | 89 | 759 | -- | -- |
| 126.03 | 0.523 | 9.14 | -2.04 | 1.55 | 0.888 | -- | -- | -0.376 | 1.08 | 88.84 | 759 | -- | -- |
| 233.42 | 0.712 | 9.14 | -1.85 | -- | 1.97 | -- | -0.0717 | -0.468 | -- | 88 | 901 | -- | -- |
| 140.89 | 0.556 | 9.12 | -2.13 | 1.82 | -- | 0.606 | -- | -0.26 | 0.327 | -- | -- | -- | -- |
| 142.47 | 0.559 | 9.12 | -2.15 | 1.82 | -- | -- | -- | -0.262 | 0.297 | -- | -- | -- | -- |
| 233.27 | 0.711 | 9.14 | -1.84 | -- | 2 | -- | -- | -0.467 | -- | 88 | 916 | -- | -- |
| 228.82 | 0.705 | 9.08 | -- | 1.8 | 1.44 | -- | -- | -0.158 | 0.273 | 90 | 1459 | -- | -- |
| 349.98 | 0.874 | 9.09 | -2.09 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 264.43 | 0.761 | 9.07 | -- | 1.79 | -- | -- | -- | -0.0226 | 0.234 | -- | -- | -- | -- |
| 321.29 | 0.835 | 9.11 | -- | -- | 2.24 | -- | -- | -0.295 | -- | 88 | 937 | -- | -- |
| 465.29 | 1.01 | 9.04 | -- | -- | -- | -- | -- | -0.00186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.82 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 2 | 112.64 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 11 | 114.17 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 38 | 116.62 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 40 | 116.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 53 | 117.27 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 59 | 117.41 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 64 | 117.54 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 66 | 117.59 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 68 | 117.66 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 70 | 117.67 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 83 | 117.80 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 108 | 117.94 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 149 | 118.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 151 | 118.08 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 157 | 118.10 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 205 | 118.28 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 294 | 118.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 361 | 118.86 | atmosphere | 1010.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 414 | 119.01 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 428 | 119.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 512 | 119.23 | humidity | 90.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 521 | 119.25 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 530 | 119.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 574 | 119.35 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 18 | 10 |
| 575 | 119.35 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 585 | 119.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 592 | 119.38 | humidity | 90.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 627 | 119.44 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 670 | 119.52 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 673 | 119.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 808 | 119.72 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |