BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0556000 Os07g0556000|AK121938
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0556000 Cyclin-like domain containing protein 528 e-150
Os09g0466100 Cyclin-like domain containing protein 96 4e-20
Os03g0392000 95 6e-20
Os06g0236600 Similar to Cyclin delta-1 94 2e-19
Os08g0479300 Cyclin-like domain containing protein 93 2e-19
Os07g0620800 Cyclin-like domain containing protein 90 2e-18
Os12g0588800 Cyclin-like domain containing protein 77 2e-14
Os03g0617500 Cyclin-like domain containing protein 73 2e-13
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/320 (82%), Positives = 265/320 (82%)
Query: 1 MDMATGAKXXXXXXXXXXXFDLENPFTSPADEPIASLLDAEGHHSPSVXXXXXXXXXXXX 60
MDMATGAK FDLENPFTSPADEPIASLLDAEGHHSPSV
Sbjct: 1 MDMATGAKEVVVVEAYEYEFDLENPFTSPADEPIASLLDAEGHHSPSVSAAASAARREAA 60
Query: 61 GFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQR 120
GFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQR
Sbjct: 61 GFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQR 120
Query: 121 AAAISAADIQRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHP 180
AAAISAADIQRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHP
Sbjct: 121 AAAISAADIQRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHP 180
Query: 181 ALLDAIKARAVDLLLRVQPEVKMAEFSPSVXXXXXXXXXXXXXXXXXXXXFEAGVAACPF 240
ALLDAIKARAVDLLLRVQPEVKMAEFSPSV FEAGVAACPF
Sbjct: 181 ALLDAIKARAVDLLLRVQPEVKMAEFSPSVAAAAALLAAAGEVAGAHLLGFEAGVAACPF 240
Query: 241 VNSEKLRECGEVMAAACGVGPSWAAAATSAETPVTVLGHHXXXXXXXXXXXXVGSAANSA 300
VNSEKLRECGEVMAAACGVGPSWAAAATSAETPVTVLGHH VGSAANSA
Sbjct: 241 VNSEKLRECGEVMAAACGVGPSWAAAATSAETPVTVLGHHRSASSESERTTTVGSAANSA 300
Query: 301 DAKRRCMGPPRQWGVGGPDE 320
DAKRRCMGPPRQWGVGGPDE
Sbjct: 301 DAKRRCMGPPRQWGVGGPDE 320
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 14/157 (8%)
Query: 26 FTSPADEPIASLLDAEGHHSPSVXXXXXXXXXXXXGFIS-KVRYDGELD----VH----- 75
F P++E +A L++ E H P G + +VR D +D VH
Sbjct: 61 FAVPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDA-IDWIWKVHSYYSF 119
Query: 76 -PRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGEE 134
P A LA+NY+DR+LS QL ++ W +LLA++CL+LAAKM+ + D+Q GEE
Sbjct: 120 APLTACLAVNYLDRFLSLYQLPDGKD-WMTQLLAVACLSLAAKMEETDVPQSLDLQVGEE 178
Query: 135 -FMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFL 170
++F+ IQRME +VL+ L+WR ++VTP +++ +FL
Sbjct: 179 RYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFL 215
>Os03g0392000
Length = 386
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 76 PRVAYLALNYVDRYLSKRQLACERN-PWAPRLLAISCLTLAAKMQRAAAISAADIQRGE- 133
P AYLA+NY+DR+LS + + + PW +LL ++CL+LAAKM+ AA D+Q
Sbjct: 122 PLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNP 181
Query: 134 EFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDL 193
E++FD I RME +VL L+WR ++VTP ++G FL R + + +R ++
Sbjct: 182 EYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNR---ITSELISRCTEI 238
Query: 194 LLRVQPEVKMAEFSPS 209
+L F PS
Sbjct: 239 ILSTMKATVFLRFRPS 254
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 62 FISKVRYDGELDVH---PRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKM 118
+I KVR VH P AYLA++Y+DR++S R L + WA +LL ++CL+LAAKM
Sbjct: 131 WILKVR-----SVHGFQPATAYLAVSYMDRFMSSRSLP--DHGWASQLLCVACLSLAAKM 183
Query: 119 QRAAAISAADIQ-RGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFF 169
+ ++A D+Q G F+F+ IQRME +VL L+WR RSVTP AF+ FF
Sbjct: 184 EESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFF 235
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 11/136 (8%)
Query: 78 VAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGE-EFM 136
AYLA+NY+DR+LS+ +L E W +LL+++CL++AAKM+ D+Q GE F+
Sbjct: 130 TAYLAVNYLDRFLSQYELP-EGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFL 188
Query: 137 FDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFF---LSACFPQPRHPALLDAIKARAVDL 193
F+ I RME +VL L WR ++VTP +++ +F L++ PR L R+ +L
Sbjct: 189 FEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLL------RSSEL 242
Query: 194 LLRVQPEVKMAEFSPS 209
+LR+ EF PS
Sbjct: 243 ILRIAAGTGFLEFRPS 258
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 17/262 (6%)
Query: 26 FTSPADEPIASLLDAEGHHSPSVXXXXXXXXXXXXGFISKVRYDGELDVH------PRVA 79
F +DE +A L++ E H P K D VH P
Sbjct: 57 FPIDSDEFVALLVEKEMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSL 116
Query: 80 YLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGE-EFMFD 138
YLA+NY+DR+LS L + + W +LL++SCL+LA KM+ D+Q + E++F+
Sbjct: 117 YLAVNYLDRFLSSFNLPHDES-WMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFE 175
Query: 139 EAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDLLLRVQ 198
I+RME +V+ L+WR ++VTP +F+G+FL F + + P+ + + DL +
Sbjct: 176 ARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDK-FNEGKPPSY--TLASWCSDLTVGTL 232
Query: 199 PEVKMAEFSPSVXXXXXXXXXXXXXXXXXXXXFEAGVAACPF-VNSEKLRECGEVMAAAC 257
+ + F PS F + + VN E + C E+M
Sbjct: 233 KDSRFLSFRPS---EIAAAVVLAVLAENQFLVFNSALGESEIPVNKEMVMRCYELMVEKA 289
Query: 258 GVGPSWAAAATSA--ETPVTVL 277
V + A+S+ +P+TVL
Sbjct: 290 LVKKIRNSNASSSVPHSPITVL 311
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 70 GELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADI 129
G R AYLA+ Y DR+ +R++ E PWA RLL+I+C+++AAKM+ + + ++
Sbjct: 112 GYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEF 171
Query: 130 QRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLS 171
G +F I+RME +VL+ L WR +VTP FL F S
Sbjct: 172 DAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSS 213
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 77 RVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQ--RAAAISAADIQRGEE 134
R AYLA+ Y DR+ +R + PWA RLLA++C++LAAKM+ RA A+S G++
Sbjct: 67 RTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDD 126
Query: 135 -FMFDEAKIQRMEQMVLNALEWRTRSVTPLAFL 166
+ F I+RME +VL+ L+WR +VTP +L
Sbjct: 127 GYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,300,932
Number of extensions: 310418
Number of successful extensions: 757
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 8
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)