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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0588800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0325) R2 : 0.462
β1 : -1.58 (0.126) R2dD : 0.223 R2D : 0.134
β2 : 0.796 (0.081) R2dC : 0.119 R2C : 0.0863
β3 : -0.263 (0.326) R2dE : 0.00179 R2E : -0.0192
β4 : -2.95 (0.33) R2dD*C : 0.0962 R2D*C : 0.0714
β5 : -26.5 (2.98) R2dD*E : 0.222 R2D*E : -0.0027
γ1 : -0.123 (0.0704) R2dN8 : 0.00512 R2N8 : -0.0138
σ : 0.604
deviance : 165.49
__
_____
C
peak time of C : 14.9
E
wheather : atmosphere
threshold : 1005
memory length : 33
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.49 0.604 3.49 -1.58 0.796 -0.263 -2.95 -26.5 -0.123 14.9 1005 33 2 1
194.92 0.65 3.51 -1.11 0.855 1.79 -2.73 -- -0.101 14.7 982.3 20 1.99 1.53
192.41 0.651 3.5 -1.65 0.781 -0.339 -- -25.5 -0.132 14.9 1002 31 2.1 1.12
216.81 0.686 3.53 -1.23 0.815 1.73 -- -- -0.128 14.8 995.6 19 2 1.56
226.33 0.701 3.49 -1.69 -- -0.751 -- -25.5 -0.119 -- 1001 33 2.13 1.15
218.24 0.693 3.49 -1.19 0.673 -- -2.38 -- 0.00565 14.8 -- -- -- --
237.85 0.722 3.5 -1.25 0.666 -- -- -- -0.00833 14.9 -- -- -- --
251.23 0.741 3.53 -1.28 -- 1.29 -- -- -0.125 -- 1000 18 2.02 1.52
257.5 0.747 3.5 -- 0.832 1.73 -- -- 0.00918 14.9 997.6 19 1.99 1.55
263.51 0.759 3.51 -1.27 -- -- -- -- -0.0254 -- -- -- -- --
278.73 0.781 3.47 -- 0.691 -- -- -- 0.13 14.9 -- -- -- --
294.2 0.801 3.5 -- -- 1.28 -- -- 0.0173 -- 1000 18 2.02 1.52
306.31 0.817 3.47 -- -- -- -- -- 0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.73 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 165.84 wind 3.0 30 < th dose independent rect. 2 1
4 165.94 atmosphere 995.0 30 > th dose dependent rect. 2 1
9 166.04 temperature 10.0 30 > th dose independent rect. 2 1
11 166.04 temperature 30.0 30 < th dose independent rect. 2 1
12 166.04 humidity 50.0 30 > th dose independent rect. 2 1
16 166.04 atmosphere 1010.0 30 < th dose independent rect. 2 1
18 166.04 radiation 1.0 30 < th dose independent rect. 2 1
23 166.04 precipitation 0.1 30 < th dose independent rect. 2 1
24 166.04 temperature 10.0 30 > th dose independent rect. 3 23
25 166.04 radiation 1.0 30 < th dose dependent rect. 2 1
30 166.04 precipitation 0.1 30 < th dose dependent rect. 2 1
32 166.11 wind 9.0 30 < th dose dependent rect. 2 1
34 166.27 temperature 10.0 30 > th dose dependent rect. 2 1
37 166.38 temperature 30.0 30 < th dose dependent rect. 2 1
38 166.44 humidity 50.0 30 > th dose dependent rect. 2 1
43 166.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
55 167.55 wind 1.0 30 > th dose independent rect. 2 1
94 170.40 radiation 1.0 43200 < th dose dependent rect. 3 1
102 173.18 wind 9.0 30 < th dose independent rect. 3 23
108 175.27 radiation 10.0 4320 < th dose dependent rect. 3 1
116 175.28 wind 9.0 1440 < th dose independent rect. 3 1
117 175.28 temperature 10.0 1440 > th dose independent rect. 3 1
120 175.28 temperature 30.0 1440 < th dose independent rect. 3 1
124 175.28 humidity 50.0 1440 > th dose independent rect. 3 1
133 175.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
134 175.28 radiation 1.0 1440 < th dose independent rect. 3 1
154 175.28 temperature 10.0 1440 > th dose independent rect. 4 23
163 175.40 atmosphere 995.0 10 > th dose independent rect. 3 23
166 176.61 temperature 25.0 90 > th dose dependent rect. 1 3
168 176.80 temperature 20.0 720 > th dose dependent rect. 3 7
172 177.82 temperature 25.0 90 > th dose independent rect. 1 3
189 181.05 temperature 10.0 720 > th dose dependent rect. 3 7
201 182.74 temperature 25.0 720 < th dose independent rect. 7 4
202 182.78 precipitation 0.1 30 < th dose independent rect. 3 23
203 182.78 precipitation 0.1 30 < th dose dependent rect. 3 23
214 183.96 temperature 25.0 720 > th dose independent rect. 5 6
215 183.98 temperature 20.0 720 < th dose independent rect. 5 2
227 184.70 temperature 20.0 720 > th dose independent rect. 3 4
241 185.21 temperature 25.0 720 < th dose dependent rect. 4 5
242 185.26 humidity 50.0 10 > th dose independent rect. 3 23
247 185.53 temperature 25.0 720 < th dose dependent rect. 5 2
252 185.68 temperature 30.0 720 < th dose dependent rect. 4 7
279 186.69 temperature 30.0 720 < th dose dependent rect. 2 9
314 187.46 wind 1.0 10 > th dose independent rect. 19 16
369 188.35 temperature 10.0 270 > th dose dependent rect. 4 18
427 189.65 wind 1.0 10 > th dose independent rect. 16 19
446 189.89 temperature 20.0 720 > th dose dependent sin 5 NA
459 190.05 atmosphere 1005.0 10 > th dose dependent rect. 1 4
513 190.72 temperature 30.0 10 < th dose independent rect. 11 7
577 191.61 temperature 30.0 10 < th dose independent rect. 11 18
607 191.96 temperature 30.0 720 < th dose dependent sin 5 NA
610 191.99 temperature 30.0 10 < th dose independent rect. 11 5
635 192.23 temperature 10.0 270 > th dose dependent rect. 22 5
691 192.80 radiation 30.0 270 < th dose independent rect. 3 20
779 193.49 temperature 10.0 90 > th dose dependent rect. 3 22
782 193.53 temperature 30.0 270 < th dose dependent rect. 9 7
787 193.58 wind 1.0 10 < th dose independent rect. 13 14
827 194.05 radiation 40.0 30 < th dose independent rect. 3 23
860 194.26 humidity 60.0 270 > th dose independent rect. 3 8
862 194.31 temperature 10.0 30 > th dose dependent rect. 3 8
876 194.45 radiation 30.0 270 < th dose independent rect. 3 8
888 194.53 atmosphere 1010.0 30 < th dose independent rect. 5 6
899 194.63 temperature 10.0 30 > th dose dependent rect. 5 6
947 194.92 wind 1.0 10 > th dose independent rect. 12 23
977 195.12 wind 1.0 10 < th dose independent rect. 6 21
982 195.16 temperature 25.0 90 > th dose dependent rect. 16 22