BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0588800 Os12g0588800|AK064396
(365 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0588800 Cyclin-like domain containing protein 441 e-124
Os03g0617500 Cyclin-like domain containing protein 235 4e-62
Os03g0203800 Cyclin-like domain containing protein 119 3e-27
Os03g0392000 99 4e-21
Os08g0479300 Cyclin-like domain containing protein 98 1e-20
Os06g0236600 Similar to Cyclin delta-1 96 3e-20
Os09g0466100 Cyclin-like domain containing protein 95 8e-20
Os07g0620800 Cyclin-like domain containing protein 89 4e-18
Os07g0556000 Cyclin-like domain containing protein 77 3e-14
Os09g0111100 Cyclin-like domain containing protein 75 6e-14
Os09g0382300 Similar to Cyclin D3.1 protein 68 1e-11
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/352 (66%), Positives = 234/352 (66%)
Query: 14 GFSLTCQEXXXXXXXXXXXXXXXXXXFLFYNXXXXXXXXXXXXXXXXQMVSKEXXXXXXX 73
GFSLTCQE FLFYN QMVSKE
Sbjct: 14 GFSLTCQEDGADLGDGVVDDDDDGDVFLFYNAVAAADDEEEEEEYVEQMVSKEASFCCSS 73
Query: 74 XXXXXXXXXXXXXXXXXXXXXWFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCL 133
WFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCL
Sbjct: 74 SSSLFDAAAGDGYGDGDGDGDWFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCL 133
Query: 134 RRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLS 193
RRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLS
Sbjct: 134 RRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLS 193
Query: 194 TLGWRMGAVTPFDFLPCFSSRLXXXXXXXXXXXXXXXXXXXXVALNAVGFIFATAEAGSV 253
TLGWRMGAVTPFDFLPCFSSRL VALNAVGFIFATAEAGSV
Sbjct: 194 TLGWRMGAVTPFDFLPCFSSRLHRHHHGGAGAAGHGAAAAARVALNAVGFIFATAEAGSV 253
Query: 254 LDYRPSTVXXXXXXXXXXXXPLTKEALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNR 313
LDYRPSTV PLTKEALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNR
Sbjct: 254 LDYRPSTVAAAAILAASYGAPLTKEALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNR 313
Query: 314 RSSKRPLQCSDSNEIXXXXXXXXXXXXXXXXXXXXXXXXMNKRLRPEPPRIR 365
RSSKRPLQCSDSNEI MNKRLRPEPPRIR
Sbjct: 314 RSSKRPLQCSDSNEITTTSTYDSVLVDDVTDTAAFAATAMNKRLRPEPPRIR 365
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/215 (61%), Positives = 147/215 (68%), Gaps = 16/215 (7%)
Query: 95 WFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACV 154
WF AR A VKWILETRG FGF HRTAYLAIAYFDRFCLRR +DR MPWAARLL++ACV
Sbjct: 43 WFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACV 102
Query: 155 SVAAKMEEYQSPALSEFDAG---GGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
S+AAKMEEY++PALSEF AG G F IRRMELLVLSTL WRM AVTPFD+LPC
Sbjct: 103 SLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCL 162
Query: 212 SSRLXXXXXXXXXXXXXXXXXXXXVALNAVGFIFATAEAGSVLDYRPSTVXXXXXXXXXX 271
SSRL A + IF+ AEA SVLD+RPSTV
Sbjct: 163 SSRL------------RRHVGGGGGAGASAALIFSAAEAASVLDHRPSTVAAAAVLAATH 210
Query: 272 XXPLTKEALESKMSNLSPSCLIDKENVHACYSMMV 306
LT+EALESKMS LSPS L+DKE+V ACYS M+
Sbjct: 211 GA-LTREALESKMSGLSPSFLLDKEDVFACYSAML 244
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 20/223 (8%)
Query: 95 WFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACV 154
W + AR V WI++T F F +TAY+A+ Y DRF RR VDR+ WA +LLS+AC+
Sbjct: 95 WMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDK-EWALQLLSVACL 153
Query: 155 SVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSR 214
S+AAK+EE + P L EF ++ S+ RMELLVL+TL W+M TPF +L CF+++
Sbjct: 154 SLAAKVEERRPPRLPEFKLD---MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAK 210
Query: 215 LXXXXXXXXXXXXXXXXXXXXVALNAVGFIFATAEAGSVLDYRPSTVXXXXXXXXXXXXP 274
+ L A+ IFA+ + S + Y+PST+
Sbjct: 211 F-------------RHDERKAIVLRAIECIFASIKVISSVGYQPSTIALAAILIARNKET 257
Query: 275 LTK-EALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSS 316
+ L+S + +L +D +V++CY+ M+ + + +S+
Sbjct: 258 APNLDELKSVVGSLWQQ--LDTGHVYSCYNKMMIQEDRSMQST 298
>Os03g0392000
Length = 386
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 100 RLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVD-REAMPWAARLLSIACVSVAA 158
R+AA+ WI + + Y+ FG AYLA+ Y DRF MPW +LL +AC+S+AA
Sbjct: 104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAA 163
Query: 159 KMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215
KMEE +P + VF +++I RME++VL+TL WRM AVTPF ++ F ++
Sbjct: 164 KMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI 221
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 98 QARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVA 157
+ R A+ WI E Y+ F TAYLA+ Y DRF + + E W +LLS+AC+S+A
Sbjct: 108 RVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELP-EGRDWMTQLLSVACLSIA 166
Query: 158 AKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215
AKMEE P + G R +F ++I RMELLVL+ L WRM AVTPF ++ F +L
Sbjct: 167 AKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKL 225
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 103 AVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEE 162
+V WIL+ R GF TAYLA++Y DRF R + WA++LL +AC+S+AAKMEE
Sbjct: 128 SVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPDHG--WASQLLCVACLSLAAKMEE 185
Query: 163 YQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215
+P L + G R +F +I+RMEL+VL L WR+ +VTPF F+ F+ ++
Sbjct: 186 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKV 239
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 98 QARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVA 157
+ R+ A+ WI + Y+ F TA LA+ Y DRF ++ + W +LL++AC+S+A
Sbjct: 101 RVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLP-DGKDWMTQLLAVACLSLA 159
Query: 158 AKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
AKMEE P + G R VF + +I+RMELLVLSTL WRM AVTPF ++ F
Sbjct: 160 AKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYF 214
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 100 RLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAK 159
R A+ WI + Y+ FG + YLA+ Y DRF + + W +LLS++C+S+A K
Sbjct: 95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDE-SWMQQLLSVSCLSLATK 153
Query: 160 MEEYQSP---ALSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
MEE P L FDA VF + I+RMEL+V+ TL WR+ AVTPF F+ F
Sbjct: 154 MEETVVPLPMDLQVFDAE--YVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYF 206
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 112 GYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEF 171
G R AYLA+ Y DR+ +R++ E PWA RLL+I+C+++AAKM+ + + ++
Sbjct: 70 GELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADI 129
Query: 172 DAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSS 213
G +F I+RME +VL+ L WR +VTP FL F S
Sbjct: 130 QRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLS 171
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 99 ARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAA 158
AR AAV W L GF TA LA+AY DR L + PW ARL ++ACV++AA
Sbjct: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAA 136
Query: 159 KMEEYQSPALSEF--------DAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFL 208
K+EE + P L + D VF ++RRMELLVLS LGWRM VTP +L
Sbjct: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 99 ARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAA 158
AR +V WIL+ + Y GF TAYLA+ Y DRF R + E WA +LL++AC+S+AA
Sbjct: 81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHL-PEGQGWAMQLLAVACLSLAA 139
Query: 159 KMEEYQSPALSEFDA 173
KMEE P+L + A
Sbjct: 140 KMEETLVPSLLDLQA 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,607,429
Number of extensions: 233993
Number of successful extensions: 617
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 11
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)