Os09g0111100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os09g0111100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.49 | 0.449 | 8.73 | 1.67 | 1.04 | -0.781 | 1.08 | 0.0285 | 0.453 | 3.44 | 0.0595 | 57 | -- | -- |
| 91.52 | 0.446 | 8.73 | 1.67 | 1.05 | -0.786 | 1.11 | -- | 0.454 | 3.43 | 0.06 | 58 | -- | -- |
| 93.54 | 0.45 | 8.73 | 1.62 | 1.03 | -0.781 | -- | 0.55 | 0.45 | 3.41 | 0.05996 | 57 | -- | -- |
| 95.33 | 0.455 | 8.73 | 1.65 | 1.03 | -0.758 | -- | -- | 0.444 | 3.53 | 0.05999 | 57 | -- | -- |
| 124.34 | 0.522 | 8.73 | 1.71 | -- | -0.375 | -- | 0.539 | 0.469 | -- | 0.04 | 23 | -- | -- |
| 105.6 | 0.482 | 8.71 | 1.73 | 0.823 | -- | 0.224 | -- | 0.486 | 7.17 | -- | -- | -- | -- |
| 105.73 | 0.482 | 8.71 | 1.73 | 0.822 | -- | -- | -- | 0.486 | 7.23 | -- | -- | -- | -- |
| 126.23 | 0.526 | 8.73 | 1.73 | -- | -0.372 | -- | -- | 0.475 | -- | 0.05999 | 57 | -- | -- |
| 168.98 | 0.605 | 8.71 | -- | 1.04 | -0.722 | -- | -- | 0.411 | 3.66 | 0.05513 | 47 | -- | -- |
| 141.53 | 0.556 | 8.72 | 1.75 | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
| 184.87 | 0.636 | 8.75 | -- | 0.84 | -- | -- | -- | 0.293 | 7.09 | -- | -- | -- | -- |
| 204.95 | 0.669 | 8.77 | -- | -- | -0.393 | -- | -- | 0.282 | -- | 0.002237 | 27 | -- | -- |
| 222.1 | 0.696 | 8.77 | -- | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.08 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 2 | 84.36 | temperature | 15.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 3 | 84.46 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 5 | 84.56 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 8 | 84.59 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 17 | 84.64 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 20 | 84.64 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 26 | 84.66 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 40 | 84.68 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 51 | 84.70 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 58 | 84.71 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 63 | 84.73 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 22 |
| 67 | 84.74 | temperature | 15.0 | 14400 | < th | dose independent | no | NA | NA |
| 69 | 84.74 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 20 |
| 70 | 84.74 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 81 | 84.78 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 94 | 84.82 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 97 | 84.83 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 103 | 84.85 | temperature | 15.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 122 | 84.91 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 153 | 85.01 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 215 | 85.17 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 222 | 85.19 | temperature | 15.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 249 | 85.29 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 291 | 85.43 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 328 | 85.54 | temperature | 15.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 333 | 85.54 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 340 | 85.57 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 349 | 85.60 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 350 | 85.60 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 357 | 85.62 | temperature | 15.0 | 14400 | > th | dose independent | no | NA | NA |
| 373 | 85.64 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 395 | 85.68 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 469 | 85.85 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 509 | 86.06 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 757 | 87.57 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 773 | 87.76 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 781 | 87.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 783 | 87.96 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 790 | 88.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 805 | 88.34 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 815 | 88.48 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 820 | 88.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 829 | 88.58 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 830 | 88.60 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 843 | 88.78 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 852 | 88.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 854 | 88.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 856 | 88.93 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 862 | 88.97 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 866 | 88.99 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 873 | 89.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 876 | 89.10 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 11 |
| 881 | 89.11 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 885 | 89.14 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 5 |
| 889 | 89.15 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 14 |
| 896 | 89.23 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 900 | 89.24 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 907 | 89.30 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 12 |
| 909 | 89.31 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 912 | 89.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 914 | 89.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 915 | 89.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 918 | 89.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 919 | 89.33 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 927 | 89.35 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 928 | 89.36 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 13 |
| 929 | 89.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 932 | 89.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 944 | 89.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 964 | 89.54 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 966 | 89.54 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 970 | 89.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 972 | 89.57 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 981 | 89.61 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 10 | 10 |
| 982 | 89.61 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 987 | 89.65 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 7 |