BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0111100 Os09g0111100|AK103499
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0111100 Cyclin-like domain containing protein 392 e-109
Os03g0392000 94 1e-19
Os09g0466100 Cyclin-like domain containing protein 87 2e-17
Os08g0479300 Cyclin-like domain containing protein 86 6e-17
Os07g0620800 Cyclin-like domain containing protein 82 9e-16
Os03g0617500 Cyclin-like domain containing protein 72 6e-13
Os12g0588800 Cyclin-like domain containing protein 71 1e-12
Os06g0236600 Similar to Cyclin delta-1 70 2e-12
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/364 (60%), Positives = 222/364 (60%)
Query: 1 MAFATLFDSLYCPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGKE 60
MAFATLFDSLYCPEE RGKE
Sbjct: 1 MAFATLFDSLYCPEEHLDLFHDTAADDDLHLDLHLHQPPPPPPLLDDDLPALFHALRGKE 60
Query: 61 DPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDR 120
DPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDR
Sbjct: 61 DPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDR 120
Query: 121 PWMXXXXXXXXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSA 180
PWM KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSA
Sbjct: 121 PWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSA 180
Query: 181 LGWRMHPVTPLSYLQPLLGTAHAARLHHCDTALLALMPDWRWPRHRPSXXXXXXXXXXXX 240
LGWRMHPVTPLSYLQPLLGTAHAARLHHCDTALLALMPDWRWPRHRPS
Sbjct: 181 LGWRMHPVTPLSYLQPLLGTAHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATAG 240
Query: 241 XXXXXXXXXXXXXXXXXXPKDEMXXXXXXXXXXXXXXXXXXXXXXXXNKRKGAAGLYSAP 300
PKDEM NKRKGAAGLYSAP
Sbjct: 241 WCGGGGGDDAELLALIDAPKDEMAECAKIISEEAAAAAAGGIVIGGENKRKGAAGLYSAP 300
Query: 301 ASPSGVIGXXXXXXXXXXXXXXXXXXXXXEPPGRPIKRGXXXXXXXXXXXXXEESRDAWP 360
ASPSGVIG EPPGRPIKRG EESRDAWP
Sbjct: 301 ASPSGVIGASACFSCDSSSSSVDSLFAALEPPGRPIKRGAAAATTADPLPADEESRDAWP 360
Query: 361 PYAA 364
PYAA
Sbjct: 361 PYAA 364
>Os03g0392000
Length = 386
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 16/165 (9%)
Query: 73 GGV--SAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRL-GDRPWMXXXXXX 129
GG+ S R AA+ W + A F L A LAV YLDR + D PWM
Sbjct: 97 GGIELSCRIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIV 156
Query: 130 XXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVT 189
K+EET P LDLQ+C N YVF+ +T+ RME++VL+ L WRM VT
Sbjct: 157 ACLSLAAKMEETAAPGTLDLQVC-------NPEYVFDAETIHRMEIIVLTTLKWRMQAVT 209
Query: 190 PLSYLQPLLGTAHAAR------LHHCDTALLALMPDWRWPRHRPS 228
P +Y+ L + + C +L+ M + R RPS
Sbjct: 210 PFTYIGHFLDKINEGNRITSELISRCTEIILSTMKATVFLRFRPS 254
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 70 DGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXX 129
DG + R A+ W + + F+ LTA LAV YLDR FL + WM
Sbjct: 95 DGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDR-FLSLYQLPDGKDWMTQLLAV 153
Query: 130 XXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVT 189
K+EET VP LDLQ+ E YVFE KT++RMELLVLS L WRM VT
Sbjct: 154 ACLSLAAKMEETDVPQSLDLQV-------GEERYVFEAKTIQRMELLVLSTLKWRMQAVT 206
Query: 190 PLSYLQPLL 198
P SY+ L
Sbjct: 207 PFSYVDYFL 215
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXXXX 136
R A+GW FS++TA LAV YLDR FL R WM
Sbjct: 109 VRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDR-FLSQYELPEGRDWMTQLLSVACLSIAA 167
Query: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQP 196
K+EET VP LDLQ+ +P ++FE +T+ RMELLVL+ L WRM VTP SY+
Sbjct: 168 KMEETVVPQCLDLQI-----GEPR--FLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDY 220
Query: 197 LL 198
L
Sbjct: 221 FL 222
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 73 GGV--SAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXX 130
GG+ S R+ A+ W + + F L+ LAV YLDR FL D WM
Sbjct: 88 GGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDR-FLSSFNLPHDESWMQQLLSVS 146
Query: 131 XXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTP 190
K+EET VP+ +DLQ+ AE YVFE + ++RMEL+V+ L WR+ VTP
Sbjct: 147 CLSLATKMEETVVPLPMDLQVFDAE-------YVFEARHIKRMELIVMKTLKWRLQAVTP 199
Query: 191 LSYLQPLLGTAHAAR------LHHCDTALLALMPDWRWPRHRPS 228
S++ L + + C + + D R+ RPS
Sbjct: 200 FSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXXXX 136
AR A V W L GF TA LA+AY DR L + PW
Sbjct: 47 ARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAA 106
Query: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQP 196
K+EE R P L + + ++ Y F +RRMELLVLS L WRM VTP YL
Sbjct: 107 KMEEYRAPALSEFRAGVG-----DDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPC 161
Query: 197 L 197
L
Sbjct: 162 L 162
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXXXX 136
AR AAV W L GF TA LA+AY DR L + PW
Sbjct: 99 ARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAA 158
Query: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
K+EE + P L + D VF ++RRMELLVLS LGWRM VTP +L
Sbjct: 159 KMEEYQSPALSEF--------DAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFL 208
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 81 AVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXXXXKVEE 140
+V W L+ + GF TA LAV+Y+DR + L D W K+EE
Sbjct: 128 SVSWILKVRSVHGFQPATAYLAVSYMDR--FMSSRSLPDHGWASQLLCVACLSLAAKMEE 185
Query: 141 TRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
+ P LLDLQ+ ++FE +T++RMEL+VL L WR+ VTP +++
Sbjct: 186 SSAPPLLDLQI-------EGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFV 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,380,245
Number of extensions: 249621
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 8
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)