Os08g0479300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os08g0479300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.79 | 0.738 | 7.63 | -1.76 | 3.49 | -2.62 | -0.202 | -1.94 | -0.878 | 3.71 | 1010 | 9830 | -- | -- |
| 257.77 | 0.748 | 7.7 | -2.32 | 3.54 | -2.49 | -0.186 | -- | -1.01 | 3.72 | 1011 | 9911 | -- | -- |
| 246.41 | 0.731 | 7.63 | -1.73 | 3.49 | -2.56 | -- | -1.94 | -0.875 | 3.72 | 1011 | 9862 | -- | -- |
| 256.66 | 0.746 | 7.69 | -2.4 | 3.52 | -2.58 | -- | -- | -1 | 3.72 | 1010 | 9867 | -- | -- |
| 918.37 | 1.41 | 7.61 | -1.58 | -- | -2.84 | -- | -2.47 | -0.779 | -- | 1010 | 9753 | -- | -- |
| 517.88 | 1.07 | 7.52 | -1.47 | 3.63 | -- | 0.255 | -- | -0.249 | 3.74 | -- | -- | -- | -- |
| 518.07 | 1.07 | 7.52 | -1.47 | 3.63 | -- | -- | -- | -0.25 | 3.73 | -- | -- | -- | -- |
| 936.41 | 1.43 | 7.72 | -2.34 | -- | -2.8 | -- | -- | -0.99 | -- | 1010 | 9788 | -- | -- |
| 396.79 | 0.928 | 7.66 | -- | 3.52 | -1.99 | -- | -- | -0.683 | 3.71 | 1011 | 10195 | -- | -- |
| 1246.64 | 1.65 | 7.53 | -1.32 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 575.12 | 1.12 | 7.48 | -- | 3.6 | -- | -- | -- | -0.0861 | 3.73 | -- | -- | -- | -- |
| 1071.26 | 1.52 | 7.63 | -- | -- | -2.29 | -- | -- | -0.594 | -- | 1010 | 9821 | -- | -- |
| 1292.62 | 1.68 | 7.49 | -- | -- | -- | -- | -- | -0.00677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.20 | humidity | 70 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 20 | 223.84 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 24 | 224.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 29 | 224.36 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 50 | 225.40 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 51 | 225.46 | humidity | 60 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 73 | 226.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 75 | 226.40 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 100 | 227.65 | humidity | 60 | 43200 | > th | dose independent | sin | 17 | NA |
| 101 | 227.66 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 160 | 229.37 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 169 | 229.62 | radiation | 10 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 235 | 231.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 266 | 232.32 | humidity | 80 | 43200 | < th | dose dependent | sin | 18 | NA |
| 272 | 232.55 | humidity | 60 | 43200 | < th | dose independent | sin | 17 | NA |
| 290 | 233.00 | radiation | 10 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 294 | 233.05 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 301 | 233.13 | radiation | 10 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 314 | 233.31 | radiation | 10 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 317 | 233.39 | radiation | 10 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 323 | 233.47 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 370 | 234.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 390 | 234.24 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 503 | 235.06 | humidity | 70 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 549 | 235.62 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 612 | 236.15 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 728 | 237.60 | wind | 7 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 751 | 237.91 | humidity | 60 | 43200 | > th | dose independent | no | NA | NA |
| 776 | 238.21 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 832 | 239.03 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 845 | 239.16 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 874 | 239.47 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 881 | 239.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 886 | 239.60 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 898 | 239.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 963 | 240.37 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 996 | 240.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 14 |