BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0479300 Os08g0479300|AK070025
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0479300 Cyclin-like domain containing protein 603 e-173
Os09g0466100 Cyclin-like domain containing protein 284 6e-77
Os07g0620800 Cyclin-like domain containing protein 203 2e-52
Os03g0392000 182 4e-46
Os06g0236600 Similar to Cyclin delta-1 144 1e-34
Os06g0217900 Cyclin-like domain containing protein 139 5e-33
Os03g0203800 Cyclin-like domain containing protein 103 2e-22
Os09g0382300 Similar to Cyclin D3.1 protein 101 1e-21
Os12g0588800 Cyclin-like domain containing protein 99 6e-21
Os07g0556000 Cyclin-like domain containing protein 93 4e-19
Os03g0617500 Cyclin-like domain containing protein 92 9e-19
Os09g0111100 Cyclin-like domain containing protein 86 5e-17
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 603 bits (1555), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/383 (79%), Positives = 304/383 (79%)
Query: 1 MAPSSSSCHDAAASMLLCAEDNSSILWLXXXXXXXXXXXXXXXXSMVGDLAAXXXXXXXX 60
MAPSSSSCHDAAASMLLCAEDNSSILWL SMVGDLAA
Sbjct: 1 MAPSSSSCHDAAASMLLCAEDNSSILWLEDEEGEVGERRSGGCRSMVGDLAAGGGGGSGG 60
Query: 61 XXXXXXXDMFPRQSEECVASLVEREQAHMPRADYGEXXXXXXXXXXXXXXSEAIGWIWEV 120
DMFPRQSEECVASLVEREQAHMPRADYGE SEAIGWIWEV
Sbjct: 61 GGVEEEEDMFPRQSEECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEV 120
Query: 121 YTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDL 180
YTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDL
Sbjct: 121 YTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDL 180
Query: 181 QIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSS 240
QIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSS
Sbjct: 181 QIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSS 240
Query: 241 ELILRIAAGTGFLEFRPSEIXXXXXXXXXXXXXXXXXXDIAEAFTHVDKGRVLQCQEAIQ 300
ELILRIAAGTGFLEFRPSEI DIAEAFTHVDKGRVLQCQEAIQ
Sbjct: 241 ELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAFTHVDKGRVLQCQEAIQ 300
Query: 301 DHHYSMATINTVQPKPASTRRGXXXXXXXXXXXXXXXXLDAGCLSYKSDDTDAATIASHG 360
DHHYSMATINTVQPKPASTRRG LDAGCLSYKSDDTDAATIASHG
Sbjct: 301 DHHYSMATINTVQPKPASTRRGSASASSSSVPESPVAVLDAGCLSYKSDDTDAATIASHG 360
Query: 361 GGRRKSCFDSSPVTSKKRRKLSR 383
GGRRKSCFDSSPVTSKKRRKLSR
Sbjct: 361 GGRRKSCFDSSPVTSKKRRKLSR 383
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 179/383 (46%), Positives = 217/383 (56%), Gaps = 41/383 (10%)
Query: 9 HDAAASMLLCAEDNSSILWLXXXXXXXXXXXXXXXXSMVGDLAAXXXXXXXXXXXXXXXD 68
++ AAS+LLCAED+SS+L D+ A D
Sbjct: 7 YEMAASILLCAEDSSSVLGFGGEEE-----------EEEEDVVAGKRARCAGPPPPPCVD 55
Query: 69 M----FPRQSEECVASLVEREQAHMPRADYGEXXXXXXXXXXX--XXXSEAIGWIWEVYT 122
+ F SEECVA LVE E HMPR DY E +AI WIW+V++
Sbjct: 56 VAGVDFAVPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHS 115
Query: 123 YYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQI 182
YY+F+ +TA LAVNYLDRFLS Y+LP+G+DWMTQLL+VACLS+AAKMEET VPQ LDLQ+
Sbjct: 116 YYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQV 175
Query: 183 GEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSEL 242
GE R++FE +TI RMELLVL+ L WRMQAVTPFSY+DYFLR+LN G+ L SSEL
Sbjct: 176 GEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSEL 235
Query: 243 ILRIAAGTGFLEFRPSEIXXXXXXXXXXXXXXXXXXDIAEAFTHVDKGRVLQCQEAIQDH 302
IL IA GT L FRPSEI AF+HV+K R+ CQE IQ
Sbjct: 236 ILCIARGTECLGFRPSEIAAAVAAAVVGEEHA--------AFSHVNKERMSHCQEVIQ-- 285
Query: 303 HYSMATINTVQPKPASTRRGXXXXXXXXXXXXXXXXLD-AGCLSYKSDDTDAATIASHGG 361
+ + PKP+S R LD AGCLSY+SDD+ +ASH
Sbjct: 286 -----AMELIHPKPSSPSR---VFVSSSIPRSPTGVLDAAGCLSYRSDDS---AVASHYA 334
Query: 362 GRRKSC-FDSSPVTSKKRRKLSR 383
DSSPV+S KRRK+SR
Sbjct: 335 ASSWGYEHDSSPVSS-KRRKISR 356
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 171/317 (53%), Gaps = 23/317 (7%)
Query: 69 MFPRQSEECVASLVEREQAHMPRADYGEXXXXXXXXXXXXXXSEAIGWIWEVYTYYNFSS 128
+FP S+E VA LVE+E H P+ Y E +AI WI +V++YYNF
Sbjct: 56 VFPIDSDEFVALLVEKEMDHQPQRGYLEKLELGGLECSWR--KDAIDWICKVHSYYNFGP 113
Query: 129 VTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFL 188
++ YLAVNYLDRFLS + LP WM QLLSV+CLS+A KMEETVVP +DLQ+ + ++
Sbjct: 114 LSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYV 173
Query: 189 FEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRS--SELILRI 246
FE I RMEL+V+ L WR+QAVTPFS+I YFL K N G P S+ L S S+L +
Sbjct: 174 FEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGK--PPSYTLASWCSDLTVGT 231
Query: 247 AAGTGFLEFRPSEIXXXXXXXXXXXXXXXXXXD-IAEAFTHVDKGRVLQCQEAIQDHHYS 305
+ FL FRPSEI + E+ V+K V++C E + +
Sbjct: 232 LKDSRFLSFRPSEIAAAVVLAVLAENQFLVFNSALGESEIPVNKEMVMRCYELMVEK--- 288
Query: 306 MATINTVQPKPASTRRGXXXXXXXXXXXXXXXXLDAGCLSYKSDDTDAATIASHGGGRRK 365
A + ++ AS+ LDA C S++SDDT + S+ +
Sbjct: 289 -ALVKKIRNSNASS----------SVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDY 337
Query: 366 SCFDSSPVTSKKRRKLS 382
+ DS+P + KRR+L+
Sbjct: 338 NSQDSAPAS--KRRRLN 352
>Os03g0392000
Length = 386
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 113 AIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRD--WMTQLLSVACLSIAAKME 170
AI WI +V YY+F + AYLAVNYLDRFLS E D WM QLL VACLS+AAKME
Sbjct: 107 AIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKME 166
Query: 171 ETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNA 230
ET P LDLQ+ P ++F+ ETIHRME++VLT L WRMQAVTPF+YI +FL K+N GN
Sbjct: 167 ETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNR 226
Query: 231 APRSWLLRSSELILRIAAGTGFLEFRPSEIXXXXXXXXXXXXXXXXXXD--IAEAFTHVD 288
+ R +E+IL T FL FRPSEI + + VD
Sbjct: 227 ITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKLPVD 286
Query: 289 KGRVLQCQEAIQDHHYSM 306
K V +C +A+Q+ M
Sbjct: 287 KDNVGRCHQAMQEMALVM 304
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Query: 111 SEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKME 170
SE++ WI +V + + F TAYLAV+Y+DRF+S LP+ W +QLL VACLS+AAKME
Sbjct: 126 SESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPD-HGWASQLLCVACLSLAAKME 184
Query: 171 ETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNA 230
E+ P LDLQI RF+FE TI RMEL+VL L+WR+++VTPF+++D+F K+ S
Sbjct: 185 ESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGR 244
Query: 231 APRSWLLRSSELIL 244
+ R LR+ ++IL
Sbjct: 245 SSRILALRACQIIL 258
>Os06g0217900 Cyclin-like domain containing protein
Length = 223
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 129/254 (50%), Gaps = 39/254 (15%)
Query: 138 LDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRM 197
+++ S+++ E MTQLL+VA LS+AAKMEETVVP LDLQ+ + +++FE TI RM
Sbjct: 1 MEQLHSEFQQEEA--CMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRM 58
Query: 198 ELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRP 257
EL VL L WRMQAVT S+IDY+L K N + S L RS +LIL FL FRP
Sbjct: 59 ELAVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRP 118
Query: 258 SEIXXXXXXXXXXXXXXXXXXDIAEAFTHVDKGRVLQCQEAIQDH-------HYSMATIN 310
SEI +A + ++ K RVL+C E IQD S ++
Sbjct: 119 SEIAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVF 178
Query: 311 TVQPKPASTRRGXXXXXXXXXXXXXXXXLD-AGCLSYKSDDTDAATIASHGGGRRKSCFD 369
++ P LD A C+S +S+DT + A++ ++
Sbjct: 179 SIPKSPIGV-------------------LDAAACISQQSEDTFVGSPATN--------YE 211
Query: 370 SSPVTSKKRRKLSR 383
SS S KRR++ R
Sbjct: 212 SS--ASSKRRRICR 223
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 114 IGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETV 173
+GWI + + FS TAY+AV YLDRFL++ + ++W QLLSVACLS+AAK+EE
Sbjct: 104 VGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERR 163
Query: 174 VPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPR 233
P+ + ++ +++ ++ RMELLVLT L W+M TPFSY++ F K +
Sbjct: 164 PPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDER--K 217
Query: 234 SWLLRSSELILRIAAGTGFLEFRPSEI 260
+ +LR+ E I + ++PS I
Sbjct: 218 AIVLRAIECIFASIKVISSVGYQPSTI 244
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 78 VASLVEREQAHMPRADYGEXXXXXXXXXXXXXXSEAIGWIWEVYTYYNFSSVTAYLAVNY 137
+A L+ E + PR+DY + +E++ WI +V Y F +TAYLAVNY
Sbjct: 52 IAELIGGEAEYSPRSDYPDRLRSRSIDPAAR--AESVSWILKVQEYNGFLPLTAYLAVNY 109
Query: 138 LDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQ 181
+DRFLS LPEG+ W QLL+VACLS+AAKMEET+VP LDLQ
Sbjct: 110 MDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQ 153
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 113 AIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELP-EGRDWMTQLLSVACLSIAAKMEE 171
A+ WI E Y+ F TAYLA+ Y DRF + + E W +LLS+AC+S+AAKMEE
Sbjct: 103 AVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEE 162
Query: 172 TVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKL 225
P + G R +F ++I RMELLVL+ L WRM AVTPF ++ F +L
Sbjct: 163 YQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 11/136 (8%)
Query: 130 TAYLAVNYLDRFLSQYELP-EGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFL 188
AYLA+NY+DR+LS+ +L E W +LL+++CL++AAKM+ D+Q GE F+
Sbjct: 78 VAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGE-EFM 136
Query: 189 FEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLL------RSSEL 242
F+ I RME +VL L WR ++VTP +++ +F L++ PR L R+ +L
Sbjct: 137 FDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFF---LSACFPQPRHPALLDAIKARAVDL 193
Query: 243 ILRIAAGTGFLEFRPS 258
+LR+ EF PS
Sbjct: 194 LLRVQPEVKMAEFSPS 209
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 114 IGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEG-RDWMTQLLSVACLSIAAKMEET 172
+ WI E + F TAYLA+ Y DRF + + W +LL+VAC+S+AAKMEE
Sbjct: 52 VKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEY 111
Query: 173 VVPQCLDLQ--IGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNA 230
P + + +G+ + F I RMELLVL+ L+WRM AVTPF Y+ +L +
Sbjct: 112 RAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRLRR-HV 170
Query: 231 APRSWLLRSSELILRIAAGTGFLEFRPS 258
S+ LI A L+ RPS
Sbjct: 171 GGGGGAGASAALIFSAAEAASVLDHRPS 198
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 113 AIGWIWEVYTYYNFSSVTAYLAVNYLDR-FLSQYELPEGRDWMTQLLSVACLSIAAKMEE 171
A+GW FS++TA LAV YLDR FL R WM +L +VAC+++AAK+EE
Sbjct: 81 AVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAAKVEE 140
Query: 172 TVVPQCLDLQI-----GEPR--FLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFL 222
T VP LDLQ+ +P ++FE +T+ RMELLVL+ L WRM VTP SY+ L
Sbjct: 141 TRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQPLL 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,391,383
Number of extensions: 324295
Number of successful extensions: 721
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 12
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)