Os03g0203800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os03g0203800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.3 | 0.415 | 9.25 | -1.53 | 2.87 | 0.885 | 0.509 | -0.875 | -0.772 | 6.38 | 25 | 90 | -- | -- |
| 79.98 | 0.417 | 9.27 | -1.67 | 2.9 | 1.08 | 0.447 | -- | -0.851 | 6.38 | 22.92 | 68 | -- | -- |
| 79.92 | 0.416 | 9.25 | -1.54 | 2.86 | 0.898 | -- | -0.769 | -0.768 | 6.38 | 25.3 | 99 | -- | -- |
| 80.39 | 0.418 | 9.27 | -1.66 | 2.9 | 1.08 | -- | -- | -0.85 | 6.37 | 22.9 | 63 | -- | -- |
| 383.27 | 0.912 | 9.24 | -0.981 | -- | 3.28 | -- | -0.907 | -0.431 | -- | 34.49 | 350 | -- | -- |
| 93.92 | 0.454 | 9.31 | -1.89 | 2.94 | -- | 0.357 | -- | -0.985 | 6.19 | -- | -- | -- | -- |
| 94.23 | 0.455 | 9.31 | -1.89 | 2.94 | -- | -- | -- | -0.986 | 6.18 | -- | -- | -- | -- |
| 383.65 | 0.912 | 9.26 | -1.12 | -- | 3.26 | -- | -- | -0.467 | -- | 34.18 | 356 | -- | -- |
| 143.34 | 0.558 | 9.22 | -- | 2.72 | 2.29 | -- | -- | -0.609 | 6.38 | 21.05 | 226 | -- | -- |
| 543.8 | 1.09 | 9.36 | -1.81 | -- | -- | -- | -- | -0.921 | -- | -- | -- | -- | -- |
| 188.05 | 0.641 | 9.26 | -- | 2.92 | -- | -- | -- | -0.776 | 6.22 | -- | -- | -- | -- |
| 414.79 | 0.949 | 9.22 | -- | -- | 3.65 | -- | -- | -0.302 | -- | 43.79 | 355 | -- | -- |
| 629.75 | 1.17 | 9.31 | -- | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.55 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 6 |
| 3 | 70.83 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 5 | 71.05 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 3 |
| 11 | 72.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 18 | 72.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 57 | 74.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 62 | 74.78 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 74 | 75.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 103 | 75.65 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 18 |
| 127 | 76.13 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 19 |
| 150 | 76.44 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 18 |
| 159 | 76.54 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 21 |
| 170 | 76.68 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 15 |
| 187 | 76.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 208 | 77.11 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 21 |
| 218 | 77.25 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 15 |
| 317 | 78.11 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 13 |
| 319 | 78.14 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 17 |
| 337 | 78.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 352 | 78.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 422 | 78.85 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 10 |
| 483 | 79.22 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 22 | 3 |
| 494 | 79.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 500 | 79.30 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 508 | 79.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 21 |
| 509 | 79.36 | radiation | 30 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 518 | 79.42 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 23 |
| 541 | 79.53 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 8 | 19 |
| 568 | 79.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 604 | 79.74 | atmosphere | 995 | 270 | > th | dose independent | rect. | 6 | 10 |
| 613 | 79.77 | humidity | 50 | 270 | > th | dose independent | rect. | 16 | 14 |
| 616 | 79.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 637 | 79.86 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 2 |
| 664 | 79.91 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 6 |
| 666 | 79.92 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 18 |
| 672 | 79.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 673 | 79.93 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 721 | 80.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 724 | 80.14 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 725 | 80.14 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 743 | 80.21 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 15 |
| 755 | 80.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 13 |
| 759 | 80.26 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 765 | 80.28 | humidity | 50 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 797 | 80.35 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 19 |
| 811 | 80.40 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 13 |
| 812 | 80.40 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 820 | 80.43 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 13 |
| 851 | 80.51 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 3 |
| 902 | 80.65 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 21 |
| 905 | 80.66 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 21 |
| 925 | 80.70 | wind | 9 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 939 | 80.73 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 940 | 80.73 | radiation | 1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 942 | 80.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 947 | 80.75 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 971 | 80.81 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 983 | 80.84 | humidity | 50 | 270 | > th | dose independent | rect. | 1 | 20 |
| 994 | 80.86 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 7 |