Os09g0382300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin D3.1 protein.
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Os09g0382300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclin D3.1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.25 | 0.617 | 6.6 | 1.1 | 0.454 | -1.99 | -1.4 | 0.14 | -0.585 | 18.5 | 21.41 | 2182 | -- | -- |
| 172.28 | 0.611 | 6.6 | 1.07 | 0.451 | -2.01 | -1.41 | -- | -0.591 | 18.5 | 21.4 | 2210 | -- | -- |
| 176.56 | 0.619 | 6.6 | 1.1 | 0.466 | -2.01 | -- | 0.0135 | -0.593 | 17.7 | 21.44 | 2158 | -- | -- |
| 176.56 | 0.619 | 6.6 | 1.08 | 0.467 | -2 | -- | -- | -0.599 | 17.7 | 21.41 | 2154 | -- | -- |
| 186.7 | 0.636 | 6.58 | 1.2 | -- | -2 | -- | 0.216 | -0.575 | -- | 21.5 | 2490 | -- | -- |
| 285.56 | 0.792 | 6.73 | 0.134 | 0.437 | -- | -1.46 | -- | -1.19 | 17.8 | -- | -- | -- | -- |
| 289.47 | 0.797 | 6.73 | 0.147 | 0.451 | -- | -- | -- | -1.2 | 16.5 | -- | -- | -- | -- |
| 186.79 | 0.637 | 6.59 | 1.14 | -- | -2.01 | -- | -- | -0.588 | -- | 21.4 | 2490 | -- | -- |
| 199.36 | 0.658 | 6.63 | -- | 0.455 | -1.52 | -- | -- | -0.76 | 17.3 | 22 | 2084 | -- | -- |
| 300.35 | 0.81 | 6.73 | 0.13 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 290.04 | 0.797 | 6.74 | -- | 0.448 | -- | -- | -- | -1.21 | 16.5 | -- | -- | -- | -- |
| 205.55 | 0.668 | 6.63 | -- | -- | -1.54 | -- | -- | -0.748 | -- | 22.2 | 1375 | -- | -- |
| 300.8 | 0.81 | 6.73 | -- | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 176.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 11 | 180.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 20 | 181.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 27 | 181.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 44 | 181.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 50 | 182.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 104 | 183.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 110 | 183.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 113 | 183.18 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 123 | 183.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 154 | 183.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 167 | 183.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 212 | 184.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 240 | 184.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 272 | 184.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 305 | 185.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 375 | 185.60 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 419 | 185.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 435 | 185.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 436 | 186.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 493 | 186.45 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 506 | 186.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 796 | 188.00 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 852 | 188.20 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |